MmuINT0104555 @ mm10
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98076990-98077838:-
Coord C1 exon
chr7:98077629-98077838
Coord A exon
chr7:98077194-98077628
Coord C2 exon
chr7:98076990-98077193
Length
435 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCA
5' ss Score
6.35
3' ss Seq
ACCCCCTCTGTGTCCATCAGGAC
3' ss Score
9.29
Exon sequences
Seq C1 exon
GAGCGCCTGGCTCAGCTAGCCCGCGAGGATGCGGAGCGGGAACTGAAGGAGAAGGAGGAGGCTCGGAGGAAGAAGGAACTGCTGGAGCAGATGGAGAAGGCCCGCCACGAACCCATCAACCACTCAGATATGGTGGACAAGATGTTTGGCTTCCTGGGGACTTCAGGCAGCCTGCCAGGCCAGGAAGGCCAGGCGCCTAGTGGCTTTGAG
Seq A exon
GTATCAGGACTTTGGGGCAGGACTTCCTGAGGCACCCCAGAGTCTTCTATGTCTCCTGTCACATCCTTTGTCCTGATACAGAAGGCAGTGGTGACTGACTGGGTGAAGGACTATGAGTCTCAGACCCCATCCAGTCTCTGCCTGCCACGTGACCTTGGTCCACCCGCTATCCCTCTCTGAAGCCATTCTCAAACTTTTATCCAATGTCCTTGAGGATCCCCTATGTGCTGGGCTCTGTTTGGACAGTGGAGGGAAGCAGCAGAGGCCTTACCTTCTGGGAGGAGGGGCCGGCTCTGCAGAGGATGAGAGAGATGAGAGAGAGGGGGCGGGGGGGGGGGAGCAGAGAGGACAGCAGCCAGCGCTGCTTCTGTTCTGGGCCTGCGGGCTACAGGGCCCAGCCTAACGGTTAAGACACACCCCCTCTGTGTCCATCAG
Seq C2 exon
GACCTAGAGCGCGGACGGAGGGAGATGGTGGAAGAGGATGTTGACGCTGCCCTGCCCCTGCCTGATGAAGACGAGGAGGACCTTTCTGAGTACAAATTCGCCAAGTTTGCTGCCACCTACTTCCAGGGCACAACCACACACTCCTACACCCGGAGGCCTCTCAAGCAGCCGCTGCTCTACCACGACGATGAGGGTGACCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761:ENSMUST00000107128:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTCGGAGGAAGAAGGAA
R:
ACCCTCATCGTCGTGGTAGAG
Band lengths:
348-783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types