DreINT0101076 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22248143-22248745:+
Coord C1 exon
chr21:22248143-22248460
Coord A exon
chr21:22248461-22248544
Coord C2 exon
chr21:22248545-22248745
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
3' ss Seq
TTAATGTTTGGATGTTACAGGAT
3' ss Score
6.77
Exon sequences
Seq C1 exon
CGGGATCGTCGGTTAGAAGCGGAGCGGCAGCGTCTGGCTGAAGAGGAGCGTCTGAAAAACCAGATGACGGCGCGCAGGGCTCGGGCTGAGGCAGCCAGGAAGCATCAGGAGCGCCTGGCGCAGCTCGACCGAGAGCAGGAGGAGAGAGAGCTGGCAGAGCGCAACGAGACACGGAGGAAAAAAGAGCTTCTAGAGCAGATGGAGAGAGAAAAAAAGGAGCCAGTAAATGACTCCGACATGGTGGACAAGATGTTCGGATTCCTGGGCAATGCCAATTCCCTTCCCAACCTGGAGGGTGAAGCACCAGAAGGGTTTGAG
Seq A exon
GTGTGGAGCTTTGTCAATTTCAACCTAAATTGCATTGCTTGGCTTGAATCTTATCTGAGTTTTCTTAATGTTTGGATGTTACAG
Seq C2 exon
GATCTAGAGAATGCTCCAAAACAGTTTAAGGAAGTCATTGATGAGCCTCTTCCACTTCCTGACGATGAAGAGGAGGACCTATCGGAGTATAAGTTTGCAAAGTTTGCTGCAACCTACTTCCAGGGAAATGCAACACACATGTATGTACGCCGGCCACTGAAACAGCCTCTTTTGTTTCATGAAGATGAAGGAGATCAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.787 A=NA C2=0.321
Domain overlap (PFAM):
C1:
PF125723=DUF3752=PU(74.2=92.5)
A:
NA
C2:
PF125723=DUF3752=PD(24.2=47.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCTTCCCAACCTGGAGG
R:
TGTGTGTTGCATTTCCCTGGA
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]