GgaINT0104527 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192380174-192381084:-
Coord C1 exon
chr1:192380875-192381084
Coord A exon
chr1:192380378-192380874
Coord C2 exon
chr1:192380174-192380377
Length
497 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTA
5' ss Score
6.36
3' ss Seq
GACAACCATTTCTCCACCAGGAC
3' ss Score
8.35
Exon sequences
Seq C1 exon
GTACGCCTTGCCCAGCTGGCCCGCGAAGATGCAGAGAGAGAAGTAAAGGAAAAGGAGGAAGCACGTCGGAAGAAAGAGCTTCTGGAAAAAATGGAGAGAGCTCGCAACGAGCCAGTGAATGACTCAGAAATGGTGGACAAAATGTTTGGTTTCCTAGGGACGACATCCTCCCTACCTGGCCAGGAAGGGCAGGCACCCAATGGCTTCGAG
Seq A exon
GTACTACAGATGCACACAGGTTGACTGTGACATGAAAGGCTTTAGCAACACATGAATTTATTAGGTTAGAATGGGGCAATACTAAATTCCTTCAAGAGTTCCTTCCTTCTGCATGGCCCCACAGGTTTGCTATGCTGTGGCTGGGACATACATGCTCTTGCTAACTCATGACAGTATTGCTGTAAGATCAGTGAGAACCTGTGGCCTTTGAGATCTACTCCATTTTTTTCATCACTACTCAAGTCATTTGGCACTTGGACAGCCATTGCAGAAGTGAGGCCACGCTTAATGCTTCTCCAGGTGCTCTGGGAACATTGCTGAACAAAGGCATGTCCTTCTGGACTCAGGATTTGCTTGGGCTCCAGAGTTACATTTCATGGTTTTCCCTCCAGTTGGCTTTTCTTGATGGAAATCAGATAGTTGGTGAAGTCCCAATGGGGAAATACAGTTCAGCATCCAAAAACACGCTGATCACCTGACAACCATTTCTCCACCAG
Seq C2 exon
GACCTTGAGCGAGCCCAGAAGGAGCTGGAGGAAGAGGACCTTGATGCTGCATTGCCTCTCCCTGAGGAGGAGGAGGAAGATCTCTCAGAGTACAAATTTGCCAAGTTTGCTGCCACATATTTCCAGGGCACGACAACACACACCTACATTCGCCGGCCTCTCAAGCAGCCTCTCTTGTACCACGAAGATGAAGGAGACCAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAAGATGCAGAGAGAGAA
R:
CGGCGAATGTAGGTGTGTGTT
Band lengths:
344-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]