RnoINT0097380 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163026372-163027191:-
Coord C1 exon
chr1:163026982-163027191
Coord A exon
chr1:163026576-163026981
Coord C2 exon
chr1:163026372-163026575
Length
406 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCA
5' ss Score
6.35
3' ss Seq
AACTCCTCTCTGCCCATCAGGAC
3' ss Score
7.1
Exon sequences
Seq C1 exon
GAGCGCCTGGCCCAGCTAGCCCGCGAGGATGCAGAGCGGGAACTGAAGGAGAAGGAAGAGGCTCGGCGGAAGAAGGAGCTGTTACAGCAGATGGAGAGGGCCCGCCATGAGCCTATCAACCACTCAGATATGGTGGACAAGATGTTTGGCTTCCTGGGGACTTCAAGTGGCCTGCCAGGCCAGGAGGGCCAGGCACCTAGTGGCTTTGAG
Seq A exon
GTATCAGGACTTCGGGGGCGGGACTTCCTGAGGCACCCCAGAGCCTTCTCTGTCTCCTCTCACATCCTTTGCCCTGTACTAGAAGGTGGTGGTGACTGACTGGGTGAAGACCTACAGGTCTCAGATCCCATCCAGCCTCCTCCTGCCACGTGACCCTGGTCCACCTGCTACCCCTCCCTAAGGCCATTCTCAAACATCTACCCTTTGTCCTTGAGGCTCCCCTGTGTGCTGGGCTCTGTTTGGACAGTGGAGAGAAGCAGCAGAGGTCTTTCTTGCTTTCTGGGAGGAGGGGCCAGCTCTGTAGAGGTAGAGTGGTGGGGACAGAGTCAATGCTGCCTCTGTTCTGGCCCTGCCAGCTACAGGGCCCGGCCTAACAGTTAAGACACAACTCCTCTCTGCCCATCAG
Seq C2 exon
GACCTGGAGCGAGGGCGGAGGGAGATGGTGGAAGAGGATGTCGATGCTGCCCTGCCCCTGCCTGACGAGGATGAGGAGGACCTTTCTGAGTACAAATTCGCCAAATTTGCTGCCACCTACTTCCAGGGCACAACCACACACTCCTACACCCGGAGGCCCCTCAAGCAGCCACTGCTCTACCACGATGATGAGGGTGACCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGAAGAAGGAGCTGTTAC
R:
CAGCTGGTCACCCTCATCATC
Band lengths:
350-756
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]