BtaINT0098282 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57384066-57385617:+
Coord C1 exon
chr15:57384066-57384239
Coord A exon
chr15:57384240-57385389
Coord C2 exon
chr15:57385390-57385617
Length
1150 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCTAACCCTGTGCCCGCAGGTG
3' ss Score
9.82
Exon sequences
Seq C1 exon
GCCACCAAGTCCAAGAAGCCCATCATGTTGCCTGTGACGTTCATGGACGGGACCACCAAGACGCTGCTGACGGACTCGGCGACCACGGCCAAGGAGCTCTGCAATGCGCTGGCCGACAAGATCTCGCTCAAGGACCGCTTCGGGTTCTCCCTCTACATCGCCTTGTTTGATAAG
Seq A exon
GTGAGGCCAGCCCGGAAGCCCCTCCTCCCGGCACCGCCAGGGCCGCCCACCAGCTCCCACCCCAGTGCGGCCACCTACCGGCTCGGGCGCCCTTGCACGGTTACTGACCTTCCAGGGCCTCAGTTACCTCCTCCGTAAACCAGTGGGAACCCTGGCCCTGCCCCAGCTCCTTAGGATCATGGAGGGATCCTAAGCACCTAAAGAGAAACCCAACCATACAATGGAGATTGGAGCCCAGGGCTCGCTGCACGCATATGTGCCCAGGTGGATCTAACCCTCTGCTGATGACAGAGAAATAACATGGTGGAGAGAGAGCCACTGGCTCTGAGATCCAGTTTTCCTGTTTGCAAATGGACTTATGATTCCTTATCAGGAATGGTAGTTTCTTTGCACTTGTTTCGGACCGCCTAGACCTAGAGTGTGTGCCTCCCGGGGCACATGTGGGCCTGGAGCCTTCGCTGCTGAGCCGGGCCTTGTTATTGTTGGTTTGTCGCTAAGTCGTGACTGACTCTGTGTGACCCCGTGGACTGTGACCCACCAGGCTCCTCTGTCCATGGGATTTGCCAAGGCAAGAATATTAGAGTGGGTTGCCTGGGGAACCCACTTCTTTTCTGGGGAATCTGCCATTTCCTTCTCCAGGGGATCTTCCTGACCCAGGGATCGAACCTGCATCTCTTGTGTCTCCTGCACTGGCAGATGGATTCTTTACCACTGAGCTACCACAGCAGCTAAGCTGGGTCTGGATGTGGGTAACTTTTTCCTGCACACCCAGGATCACCACAGGCCACAGAGATGCCCCCCACCCCCCATCCTAGCAGGTCCAATGATAGCAGCATGTTTTCTGATGCCGTTTCTCTCAACAACAGACACCTTCTGCATCTTCAGTGACCATGTGCCCGTTACAGTTTCACAAAAAACTTCCATTAGGAAATAGGAATCCCTTGGTTGCTGTGCCAGCTCAGCGCCCGTGGTGGGATCCAGGGGTTCCCCTCGGCTGGTCTGCCTCCTGGGTGACCTGGGCAGACCCCTCCTTGCCCTGAGCCTTGGTTTTCCATCTGAACCAGAACAGTTGGCGCAGTTGATGGCTCCTTGCAGTCCTTCCCTGCCTGCTCACCCTTCCACTGGGTGACCTCTAACCCTGTGCCCGCAG
Seq C2 exon
GTGTCCTCCCTGGGCAGTGGCAGCGACCACGTCATGGACGCTATCTCCCAATGTGAACAGTACGCCAAGGAGCAGGGTGCCCAGGAGCGCAACGCCCCGTGGAGGCTCTTCTTCCGCAAGGAGGTCTTCACGCCCTGGCACAACCCCTCAGAAGACAATGTGGCCACTAACCTCATCTACCAGCAGGTGGTGCGAGGGGTCAAGTTTGGGGAGTACAGGTGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(1.9=3.4),PF093795=FERM_N=PU(50.5=79.3)
A:
NA
C2:
PF093795=FERM_N=PD(47.3=56.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCCCATCATGTTGCCTG
R:
CCACCTGCTGGTAGATGAGGT
Band lengths:
351-1501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development