MmuINT0104563 @ mm9
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105219412-105220516:-
Coord C1 exon
chr7:105220343-105220516
Coord A exon
chr7:105219640-105220342
Coord C2 exon
chr7:105219412-105219639
Length
703 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CCCACTGTGCCGTCTCACAGGTG
3' ss Score
10.72
Exon sequences
Seq C1 exon
GCCACCAAGTCCAAGAAGCCCATCATGTTGCCCGTGACCTTCATGGATGGGACCACCAAGACCCTGCTAACAGATTCAGCAACTACAGCCAGGGAGCTGTGCAATGCTCTGGCTGACAAGATCTCACTCAAGGACCGCTTTGGCTTCTCCCTCTACATCGCTCTGTTCGATAAG
Seq A exon
GTATGGTGGCCTAAGCCTAGCCCAGCCCAGTGCTGCCACCTGCTGGCTGAGGGGTTTGCATGCATGTGAGTCACTTAAGTTATGGGAAACAGGCTCTACAGAAATGGTGTCAAGCTCTCTGGCACCCGTGTACCCCATGATCAAAGGTCCAGAGCTCTCTCCAACCATGGGTGCCCAGGAGAAAGCCCTTCTCTTCCTACTTAGAAAAGAGGGCTGACAACTCTGCTCTCCAGGGTCACATCTGTGGCTGTGATGTGTAGAAGTCTGCTCAGCCACTAGTTCGCCCTTTCCACATCTTCTCCAGCTGTGTGAGTCTTCGGGTGTGAGTACACAGTCTTTCCTGCTGAGATAGGCCTGGAGTTTCCTCTGGCACTGGGAAGACCCATGGACAGGACCTTGCACTTGGTCATAGTTTGCCTGGAGCTTCCCTCATGAATTGGTGCCTCCAGTGATGGCTTGCTTAACTGTACCCCTTGCTCTGAGAAAAAAAGGACTCCCACATACACATACCTTGAAAGGCACTCACTGCATGCTACAAGCCGGCTCAGAGCCTGTCCCTGGGACCAGCCTCCCAGGGGACCTAGGACACACACTCCTCTGAACCTCAGGGCTATCTGTGCTCATGCAGTTGTCACAGTGGGTGACCCTTTGAAGTCCTTCTCTGACCCTGCCCTGCCTGTCCTCCCACTGTGCCGTCTCACAG
Seq C2 exon
GTGTCCTCCCTGGGCAGCGGCAGTGACCATGTCATGGATGCCATCTCTCAGTGTGAGCAGTACGCCAAGGAGCAGGGTGCTCAGGAGCGCAACGCCCCATGGAGGCTCTTCTTTAGAAAGGAGGTCTTCACACCCTGGCACAACCCCTCGGAGGACAACGTGGCCACGAACCTCATCTACCAGCAGGTGGTGCGAGGAGTCAAGTTTGGGGAGTACAGGTGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-Myo7a:NM_008663:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(1.9=3.4),PF093795=FERM_N=PU(50.5=79.3)
A:
NA
C2:
PF093795=FERM_N=PD(47.3=56.6),PF0037313=FERM_M=PU(32.6=38.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGTTGCCCGTGACCTTC
R:
CCACCTGCTGGTAGATGAGGT
Band lengths:
343-1046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: