DreINT0101083 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22253433-22256169:+
Coord C1 exon
chr21:22253433-22253606
Coord A exon
chr21:22253607-22255941
Coord C2 exon
chr21:22255942-22256169
Length
2335 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGC
5' ss Score
10.4
3' ss Seq
TTTGGTCCAATGTGCATCAGGTC
3' ss Score
4.8
Exon sequences
Seq C1 exon
GCCACTAAATCTAAGAAACCCATCATGTTGCCGGTGACCTTCATGGACGGCACCACTAAGACCCTGCTGACAGACTCTGCCACAACAGCTGAAGAGCTCTGCAATGCTCTGTCAGATAAAATCGGCCTGAAGGATCGCTTCGGCTTCTCCTTATACATTGCACTTTTTGATAAG
Seq A exon
GTACGCTCACTGATACTTTGTTTTTACACAAATAAATTATATAAAATTAAAAAAGATTATTTTCACACCTAATTTATGCTACTTATATATAAAAATGGAGTTGCTGCTTTTGACAGGAAGTCTCTAGTACTCATCAGGACTGCATTTGTTTGGTCTAAAATACAGTAAAAACAGAAATGTAGTAAAGTATTATTACATTTTCAGCTAATGGCATTCTTTCTTAAAATGTATTTTTTAATTCACTTGATTCCTATGAGGTGTTTCTTAGTACTGGGTTGCAGCTGGAAGGGCACGGCTGCGTAAAACATATGCCATATAGTTAGTGGTTCGTTCCACTGTGGTCATAAATAAGGGACTAAGCCGTATGAAAATGATGACGATGATTCCTATAATTTAAAGCTGAACTTAAGCAGAAGACATGTACAAAATTGTATTTTTAACAGTTTTAAATTAGAAAATAAACAATTACAGTCTCACAAATTCTTGTTTATTGTAACAGAATACACCGAAATGTACGATTTTTAAGAGCTTAGAGCAGGGGTGCCCAAACTTTTTCTTATGAAGGGCCAAAAACCAAATTTTATTGCGGGTGGTGGGCCGAAAGTAAATATACTAAACTCCATTGCATCACACTTGTCATGGGTAATTTCCTCATTTATTTCATTTTTAAAAAAATAACTAGAAAACATTAATTTGTTGTATGATGAACGTATTACAGTAAAAACAAAAACAATCCTGTTTATAACAGAATGGAGTCACACTATTCAAGCTGCACCAGTTTTTGCCTTGATTTGCTCACCAAAGTCTTCTGCATTGTCCTGTATCCGATGTGTCACTGTTTATATTTTTTAAAAATCTAATTCAGTTGCAACATTTTATTTCAGTTTGCTTTTTTTGTTGCTCAGCAATAGAAAGAAAAACAAAAAAGGGTTGCATTAAATTAGAAATGACGATCTCTGTAAAAGGCCCTAGCCCTGCCAAAGAGCTTAGAATTACCTAGAGGCGACACTCAATAGAAAGTTCCATTGCAACAGCAGCGCCCAGCAACAGCCCTGGATTCCGCCAATTTGGAGTGAAAGCCATTGGCTGTCCATTGGATCTTATTGCTGTCGCGATGGCAAGCAGGTGCTTTACTTTTTATTCATTTATTTAAAAAGCACATTAAAGCTGAGATACAACCTGAAAGACAACAACACAGCACTTACTATGACAGTCAGCACTTTTAGTAGTTTATTTTACAGACTTATATATATAAATATTAGATTAAGTTAAATTAAATAATTATTAAATTATTAAATATTTATTACAAAATAAATATTTATTTTGGAGGGATTTGCTCGTACTTCCTGATTGGTGGAATTTTTCATATTATGGGTAATGTAGTTTTCCTCACAATTTCCACTTTTAAACTTTTTTTTTTTTAAATCAAGTTTTAAAAATATGTGTTTAAATAGAATTTTCAATGAATTTTCACTTCTGGATTCCAAACTGAAAAAACAAATTTCAGGGTTTTTCTCCATCTAATGTAAATATACGAAGCTTAACATAAATGACCATATAACAGTCCAAAATCCATATTTAGGCAGCTAAAAAGTAATCCACATGATCTCAGCTGACAAATATGTGTCATCCCTAACATAACAATCAGCCGTTTTCATAAATGTAATCGTGTTCATGACTTCACACAAAACATATGCACTTTCAGAAAGTCATTCATGATTTTGGAAAAAAAAACACCTCAATAGCTATGTTTCCTTTCAAAGATTAATAAATTTAAATATTATTATATTAAAAATTAAATATGAATTAAATTTATATGCAAAACAGAAATATCACATAAAAGACATGTGAATAAAGTAGCTTTTCCATCTAATGAGAGAACAAAATCATCACTTCCTGATTAACTGGCGGTAAATATGACCAGTAAAAATGTGGTGTCGTTTGAAGGTGTAAGATGCGGAGCACAGACGCTCTTGACAATTCTGTAGAAAATTAATAATATAATAACACTAAGACTGACATGGTTACAGCATTTTAGAATGACCAAAATAACATTTACAATGTTTTACCTGCTGGTTTGTCCATTCACACACATTTCTATCATTACATGATCTCTTATAACAAAATCACATGACTTTTTATAACACTGGAATTTGTTCGGTAAAAGTGTTTCCATCGTAGCTTATGCGCATCTTTTCTTATTGAATAAAAAGTTAATTCTACTCAGTTATGCACATGTTTTTTATGTGCATTTTCAAAACTTTCAGCTACAGCTTTTGGTCAATAGTGTATGTGTCCTTCTTTATATACGTTTATTTGGTCCAATGTGCATCAG
Seq C2 exon
GTCTCATCACTGGGCAGTGGGAAGGATCATGTGATGGATGCGGTGTCGCAGTGCGAGCAGTACGCTAAAGAGCAGGGGGCTCAGGAGCGCAACGCCCCCTGGAGGCTGTTCTTCAGGAAGGAGATCTTCACCCCCTGGCACAACCCAGCAGAGGACGGTGTGGCCACCAACCTCATCTACCAGCAGATTGTGCGCGGGGTCAAATTCGGAGAGTATCGTTGTGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(1.9=3.4),PF093795=FERM_N=PU(50.5=79.3)
A:
NA
C2:
PF093795=FERM_N=PD(47.3=56.6),PF0037313=FERM_M=PU(17.4=38.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]