RnoINT0097388 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163020313-163021409:-
Coord C1 exon
chr1:163021236-163021409
Coord A exon
chr1:163020541-163021235
Coord C2 exon
chr1:163020313-163020540
Length
695 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CGTCTCTCCTCTGCTCACAGGTA
3' ss Score
10.83
Exon sequences
Seq C1 exon
GCCACCAAGTCCAAGAAGCCCATCATGTTGCCCGTGACCTTCATGGACGGGACCACTAAGACCCTGCTAGCAGATTCAGCAACCACAGCCAAGGAACTATGCAATGCTCTGGCTGACAAGATCTCACTCAAGGACCGCTTTGGCTTCTCCCTCTACATTGCTCTGTTCGATAAG
Seq A exon
GTATGGTGGTGGCCCAAGCATAGCCCAGCCTAGTGCTGCCACCTGCTGGCTGAAGTGTTTGCATGCATGTGAGCTATGGGGAATGGGCTCGAAAGAAACGGTGTCAAGCTCTCCCACAACGGGTACTCCACAGTCGGTCAGAGGTCCAGAGCTCTCTTCAACCACGGGTACCCAGAGGGAAGCCCTTCTCTTCCTGCTTAGAAAAGAGGGCAGGCACCTTGGCTCTCCGGGGTCACATCTGCTGCTGTGATGTGTAGCAGTCGGCCCAGGCATCAGTCCGTTCTTTCCACATCTTCTCCAGCTGTGTGAGTCCTCCTGGCGTGGGCACATGGTCTTTTCTGCTAAGCTGGGCCTGGAGTTTCCTCTGGCACTGGGAAGACCCAGGGATAGGACCTTGCACTTGGTCATAGTTTGCCTGGATCTTCCCTAGTCAATTGGCCTCCAGGGACAATTTGCTTAACAACATCTCTTGCTCTGAGGGAAAAAGGACTCTCACATACACACACTCACTACTGAGCTTTGAAAGTCGGTCTCTGCACACTCCAAGCCAGCTCAGAGCCTGTCCCAGAGATCAGCTTCCCAGGGGACCTAGGACACATCTTCCTGCCTCCTCTGGGCCTCCAGCCATCTTTGAAGTCCTTCTCGGACCCTGCCCTGTCTTTCTTCCCACTGTGCCGTCTCTCCTCTGCTCACAG
Seq C2 exon
GTATCCTCCCTGGGCAGTGGCAGTGACCACGTCATGGACGCAATCTCCCAGTGCGAGCAGTATGCCAAGGAGCAGGGTGCACAGGAGCGCAACGCCCCCTGGAGGCTCTTCTTCAGAAAGGAGGTCTTCACACCCTGGCACAACCCCTCGGAGGACAACGTGGCCACCAACCTCATCTACCAGCAGGTGGTGCGAGGAGTCAAGTTTGGGGAGTACAGGTGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(1.9=3.4),PF093795=FERM_N=PU(50.5=79.3)
A:
NA
C2:
PF093795=FERM_N=PD(47.3=56.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGTTGCCCGTGACCTTC
R:
CCACCTGCTGGTAGATGAGGT
Band lengths:
343-1038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]