DreINT0101038 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3154105-3154824:+
Coord C1 exon
chr18:3154105-3154278
Coord A exon
chr18:3154279-3154596
Coord C2 exon
chr18:3154597-3154824
Length
318 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TTTTTTTGTTTTTGTTTCAGGTT
3' ss Score
12.77
Exon sequences
Seq C1 exon
GCCACAAAATCGAAGAAGCCCATAATGCTGCCGGTGACTTTTATGGATGGCACAACGAAAACTCTGCTGACAGACTCTGCCACTACAGCTAAAGAGCTCTGCAATGCTCTGTCTGACAAGATCAGCCTTCAGGACCGCTTCGGCTTCTCCCTCTACATCGCACTCTTTGATAAG
Seq A exon
GTACAAAGTTACACACAAACACACACACACACACACACACACACACACACACACTTTTTCTGTTTCAATTACTTTATAGTTCAACCTATTAACTCTACAATAGAGGTTATATTGTCCGCTAAATTATTTAAATTTTTTGTTAAATGTTTCTAATTTTTATTAATAAGCATTAAGAACTAAGAAAATATCACAGGTGAAAAAATTGAAGAAGAAGAACAAAATCACAGGAGCGCTATTTATTTGGACTTTTGCTGTGTGTATATATATTTATGTGTCACTGTCGGGTCATAATGCAGTGTTTTTTTGTTTTTGTTTCAG
Seq C2 exon
GTTTCGTCTCTGGGCAGCGGTAATGATCACGTGATGGACGCCGTGTCTCAGTGTGAACAGTACGCTAAAGAGCAGGGCGCACAGGAGCGAAACGCCCCCTGGAGACTCTTCTTCAGGAAGGAGATCTTCACGCCGTGGCACGACCCAGCTGAGGACGCTGTCGCCACAAACCTCATTTACCAGCAGATCGTACGCGGCGTCAAGTTTGGTGAATACCGCTGTGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(1.9=3.4),PF093795=FERM_N=PU(50.5=79.3)
A:
NA
C2:
PF093795=FERM_N=PD(47.3=56.6),PF0037313=FERM_M=PU(29.0=38.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAACGAAAACTCTGCT
R:
CCGATCACAGCGGTATTCACC
Band lengths:
355-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]