GgaINT0104534 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192369547-192370347:-
Coord C1 exon
chr1:192370174-192370347
Coord A exon
chr1:192369775-192370173
Coord C2 exon
chr1:192369547-192369774
Length
399 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TTTCCCTCCACATTGCTTAGGTT
3' ss Score
8.37
Exon sequences
Seq C1 exon
GCAACCAAGTCCAAGAAACCAATCATGCTGCCTGTCACATTTATGGACGGGACAACAAAAACACTGCTGACAGATTCTGCAACCACTGCTAAAGAGCTCTGTAATTCATTGGCTGACAAAATCAGCCTGAAGGACCGATTTGGCTTTTCACTTTACATCGCACTTTTTGACAAG
Seq A exon
GTAGGTTATAATTAAGGCTTCTGACTAACCCTATAAAAGAAAAGGGAAATTCTCCTTGCTGTCACATTTCTTCCAGAGGGAAAGAAGGACCTTGTACTCTGAGCAAATGCCTAGTCAAAAGGTCAGAAAGAAAAAAATATATATGCATGTATGATTTTTACAGTATGAGAAGGCATACACTGGAATAGTGTTGCAGAGAGACTATGAAATCTCCCTTCTTGGATATATTCAAAACAGAGGGCATGTAGCAACCCGATCAAAGATGGACCTGCTCCGAGCAGGAGACTGGACCAGAAACCTGCAAAATCCCTCCAACAATCCTCCAGAAATGCCTCACACACAGACATCTCTACCTAGAGATGTCAGATGAATTTCACCTTTTCCCTCCACATTGCTTAG
Seq C2 exon
GTTTCTTCCCTGGGGAGTGGCAATGACCATGTGATGGATGCTGTGTCCCAGTGTGAGCAGTATGCCAAGGAGCAAGGAGCACAGGAGCGCAACGCGCCGTGGCGGCTCTTCTTCAGGAAGGAGATCTTCACTCCTTGGCACAATCCAAGTGAGGACAATGTGGCCACCAATCTGATTTACCAACAGATTGTCCGAGGGGTGAAATTTGGGGAGTACCGGTGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(1.9=3.4),PF093795=FERM_N=PU(50.5=79.3)
A:
NA
C2:
PF093795=FERM_N=PD(47.3=56.6),PF0037313=FERM_M=PU(29.6=38.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATCATGCTGCCTGTCACA
R:
CACCCCTCGGACAATCTGTTG
Band lengths:
357-756
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]