BtaINT0098291 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57402857-57404121:+
Coord C1 exon
chr15:57402857-57403014
Coord A exon
chr15:57403015-57403958
Coord C2 exon
chr15:57403959-57404121
Length
944 bp
Sequences
Splice sites
5' ss Seq
CTGATATCC
5' ss Score
-5.88
3' ss Seq
GGCCACTGCCTTCCTTGACGGCT
3' ss Score
-3.28
Exon sequences
Seq C1 exon
GCCCCCACCCAAGCACACACTGAGCCGCGTCATGGTGTCCAAGGCCCGCGGCAAGGACCGGCTGTGGAGCCACACGCGGGAGCCGCTCAAGCAGGCCCTGCTCAAGAAGATCCTGGGCAGCGAGGAGCTCTCACAGGAGGCCTGCATGGCCTTCACTG
Seq A exon
ATATCCGCACCCACAGGGGGTGGGGGGTGACATGGAGGGCAGGCAGGGGCCACAGGGAGGGGTCCCCCAGGGGAGGGTGGGACCAGGCTGGGCCTCTAGGGTGTTCGTCACCTACTTCCTTCCAAGGGGCCCTGCTGGGGCCTGGGCAGACATGGAGGGATGCTGACGGGGTGACTCCCTTACCAGGGTGCCGGGGGCTGCCCCATCCGCTGTCTCCTCACACCCTGTCATTTGGTTGACAGATTTAAACTGTGCCGTGTGCTGGCCAGGCATGGAGACACGGGGGTGAGCAGACTCTGGCCTCATGGTGCCTGTAATTGATTTGAGAGGGGAGGCATGCTGGTCAGGGTCAGTGCTGTGATGGGGCCCGACAGCACAGTGGCCTGACCTGGCCTTGGAGAACAGGGAGGGCTTCCTGGACGAAATGACATCTAGGCTGGAGACCCGCCTGGGCCCGTCCAAGGGGAGATGGGTGAAGAATGTTCCTGACAGAGGGAGAAGCGTGCGTAAAGGCCCTGAGACAAAACAAAGCCTGGCTGTTTCAAGGGCACAGATTAACTGAGCACAGCTAGAGCGTAGAGTTCAAGAAGGGAATTCAAAGACCTGGGCCGATGGATGAAAGGTTCCCCAAGCCTGTTAAGAAGCTGGGACTGTGTCCTGCAGCCACGGGGAGTGGTACAGTTGGATTTGGGGTTTGGAAAGTTGGTTCTGGTTGCTGTAAGGATTCCTGTTGTGAGGTTGGGGCCTGGAGCAGGGTGGCCAGAGGACCTGGGGAGAGAGGGTGGGCAGCGGGCATGCAGGGCAGTGTTGGCACACTATGCTGATCTCCTGGGTGAGCAGCCTGAGGCCAGGGCCACAGGGTCAGGGAGGGCAAACCCTGTTGGAGAGAGTGGCCGCCTGCCTCCTGGCCAGTGCTCCCTGATTGGCCACTGCCTTCCTTGACG
Seq C2 exon
GCTCCCCACCTGTGCTCAAGTACATGGGTGACTACCCGTCCAAGAGGATGCGCTCCGTCAATGAGCTCACCGACCAGATCTTCGAGGGAGCCCTGAAGGCCGAGCCCCTCAAGGACGAGGTGTATGTGCAGATCCTGAAGCAGCTGACTGACAACCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078412=MyTH4=PU(34.6=67.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCCAAGCACACACTG
R:
CTGATGTGGTTGTCAGTCAGCT
Band lengths:
318-1262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development