HsaINT0108915 @ hg38
Intron Retention
Gene
ENSG00000137474 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr11:77203060-77204229:+
Coord C1 exon
chr11:77203060-77203217
Coord A exon
chr11:77203218-77204075
Coord C2 exon
chr11:77204076-77204229
Length
858 bp
Sequences
Splice sites
5' ss Seq
TTGATATCC
5' ss Score
-7.71
3' ss Seq
CCTTCCTTGACAGTCCCCAGCTG
3' ss Score
0.26
Exon sequences
Seq C1 exon
GCCCCCACCCAAGCACACGCTGAGCCGTGTCATGGTGTCCAAGGCCCGAGGCAAGGACCGGCTGTGGAGCCACACGCGGGAACCGCTCAAGCAGGCGCTGCTCAAGAAGCTCCTGGGCAGTGAGGAGCTCTCGCAGGAGGCCTGCCTGGCCTTCATTG
Seq A exon
ATATCCGTGCCACTGGGCTGTGCCCAGGGGAGCCAGGGACCGGGCAGGGCCTTCGTCTGCACACTGCCTTCCTCCTGAGGGCCTGCTGCGACCCGGGCACACATGGGGAGGGTTGATGGAGTACCCCCTCCCTTGCACCTTTTGATATGCAAGGGGCTGCCTCGCCCACTGTTTTCTCTGACCCTGTCATTTGGGTGCCAGGTGGATTTGGTGCCTTGTGCTGGGCCAGGCATGCAGGTAGAGCAGGGACCAGCCCAGCCCCTGGCCTCATGGGACCATACACACATCCAGATCAATGTTGAGATGGGACCCGGCAGCACTGTGACCTGACCCATGTGACCTGGAGGGGGCAGAGAGGACTTCCTGGAGGAAGTGGTATCTAGGCTGAGCCCTGAAGGCTAAGTACGACTTAGCCAGGCAAAGGGGAGGGAGGGGGAGTGTTCCAGAGAGAGGGAGCAGCAGCAAGGCCCCGAGGCACACAGAGCAGGGCTGTTCCAGGGCTCCGGGGCTTCAGCACAGACAGGATGGGAAGACTGGGCTTAGGCAGGGTTCCCAAGCCCTGTGAGGAAGCTTGGGCCGTGTCCTAAGGCCAGGGTGAACCACTGGGCAGGGGGTGGCATGGTCAGATTCACCATCTGGGAAGTCCATCCCAGCTGCTGTGAGGGCTTGGGATGTGGGGCTGGTGACTGTGAGGAGGCGGAGAGAGGGTGGGGCAGATCATGCCCATTTTGTGAGTGTGCAGCCTGAGGGCCCAGGGTCACAGCTTCAGGTGATGCAGGCCCTGTGGGAAGTGGGGCCTCCGGACCCCAGGCCAGTGCTCCCTCTATTCGGCACAAGCCCTTCCTTGACAGTCCCCAG
Seq C2 exon
CTGTGCTCAAGTACATGGGCGACTACCCGTCCAAGAGGACACGCTCCGTCAACGAGCTCACCGACCAGATCTTTGAGGGTCCCCTGAAAGCCGAGCCCCTGAAGGACGAGGCATATGTGCAGATCCTGAAGCAGCTGACCGACAACCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137474:ENST00000409709:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078412=MyTH4=PU(34.6=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGCCGTGTCATGGTG
R:
CTGATGTGGTTGTCGGTCAGC
Band lengths:
294-1152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development