MmuINT0104571 @ mm9
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105211085-105212255:-
Coord C1 exon
chr7:105212098-105212255
Coord A exon
chr7:105211239-105212097
Coord C2 exon
chr7:105211085-105211238
Length
859 bp
Sequences
Splice sites
5' ss Seq
TAGATATCC
5' ss Score
-3.12
3' ss Seq
CTTCCTTGACAGCCTCTCACCTG
3' ss Score
-9.23
Exon sequences
Seq C1 exon
GCCCCCACCCAAGCACACGCTGAGCCGTGTCATGGTGTCCAAGGCCCGCGGTAAGGACAGGCTGTGGAGCCACACACGAGAGCCCCTCAAGCAGGCCCTGCTCAAGAAGATCCTGGGCAGTGAAGAACTCTCCCAGGAAGCCTGCATGGCCTTTGTAG
Seq A exon
ATATCCACAACCGCAGTGGCTAGGAGGGCAGCAGGGAGGGACTGGGGCAGGGCGTGGCAGGACTGGGCCCTGGCAGCAGATGGAAGACCCTGACTGGGCGCATGGCACCCCATAGTTTTCAAGGGACAGCCGCATCCTCCAGCCCCTGTGACCTTGTCATCCTGCACTGGGCCAGACAGAGATAAAGCTGTGACAAGAGCCAACCTCTGGTCTCATAAGGATGCCATACTGACTAGGATCAGTGGTGATGGTGTCAGGCCAGGAAGTGGCCTGAACCAACCCATAGAGAGAGGCAACATACTTCCTTCACTTCCTGGGGAGTGGGGCAGCATACACCAAGGTCCTGAGGCAAACCAGCAGGGCTATTTCAAGGGTACAAAATAGCTTAGCGTAACTGAAGGGCAGATGTATACTGAAGAAAGGCTCCCAGGGTCTGTTAAAAAGCTTTGGCTGCTGGAGATATAGCTGGGTGATAAAGTGTTTGTCTATCATGCCAAGGCTCTGCAATCAACACACACACACACACACACACACACACACACACACACACACACACAGGAGACAGAGACAGAGAGAACACACTAGATTATTAGATTAGGCTGTGTCCATTCCAGGAACGGGGGAGCTGCTGGGCAGGCGGTTGGGGATTAGACAATGTTTTCTGGCTGCCTTGGACACTTGGGATGTAGGATCAGGGCTTGAGGAAGGGTGGCCATGATGGGGAAGGGAAGAGAAGTGGTGAGCAGGCCACATCTACGACTATGTAACTCAGAGTTCCAGGGCTGTGTGAGTCCGACCTCCTACCTCCTAGGCCAGTGTTTCCCCTTCATCCACAAGTCCTTCCTTGACAGCCTCTCAC
Seq C2 exon
CTGTGCTCAAGTACATGGGCGACTACCCATCCAAGAGGATGCGATCCGTCAATGAGCTCACTGACCAGATCTTTGAGTGGGCACTCAAGGCTGAGCCCCTCAAGGATGAGGCCTACGTGCAGATCCTGAAGCAGCTGACTGACAATCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-Myo7a:NM_008663:38
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078412=MyTH4=PU(34.6=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGCTGAGCCGTGTCAT
R:
TGTGATTGTCAGTCAGCTGCT
Band lengths:
294-1153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: