RnoINT0097396 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163012185-163013317:-
Coord C1 exon
chr1:163013160-163013317
Coord A exon
chr1:163012339-163013159
Coord C2 exon
chr1:163012185-163012338
Length
821 bp
Sequences
Splice sites
5' ss Seq
TAGATATCC
5' ss Score
-3.12
3' ss Seq
CTTTCTTGACTGCCTCTCACCTG
3' ss Score
-2.26
Exon sequences
Seq C1 exon
GTCCCCACCCAAGCACACGCTGAGCCGTGTCATGGTGTCCAAGGCCCGAGGGAAGGACCGACTGTGGAGTCACACACGAGAGCCCCTCAAGCAGGCCCTGCTCAAGAAGATCGTGGGCAGCGAGGAACTCTCCCAGGAAGCCTGCATGTCCTTCATAG
Seq A exon
ATATCCACTGCCACGGGGGCTGGGAGGGCATCAGGGAGGGACTCGGGGCCAAGCATGGTGGACTGGGTTCTGGCAACAGATAGAAGACCCTGACTGGGCAGGTGGTACCTCACAGTTTGCAAGGGACAGCCTTGTCCTCTGCCTCCTTTGATCTTGTCATCCTGTTGAAATATAAGTATCTTATCCTGCACTGGGCCGGGCACAGAGACAAAGCTGTGACTAGAGCCAGCCCCTGGCCTCATAAGGATGCCATGCTGGCCAGAATCAGGGGTGATGGTGTCAGACCAGGAAGTGGCCTGAACCAGTCTTTAGGGAGAGCTGCCCTGGGGAGTGGGGTGGCATACACCAAGGTCCTGAGGCAAATAAGCAGGGCTATTTCAAGGGTTCAAAATAACTTAGAGTAACTGAAGGGCAGATGTATACCAAAGAAAGGCTCCCAGAGTCTGTTAAAAAGCCATGACTGCTGGAGATATAACTGGAATAGGTGTTTGCCTATCAGGCCAAGGCTCTGGGATCAATTACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAGATTATTAGAGAGAGTAGTCTGTGTCCCAGGAACAGGGGGAACTGCTGGGCAGGAGGAGGCAAAGTCAGATTGGGGATTGGACATTGTTTCTGACTGTCAGGGCTTGAGGAAGGGTGGCCATGATGGGGAAGGGAAGGGAAGTGCTGAGCTGGCCTCATCTACAGGGCCACGAGAGTCTGGCCCCCTACTTCCTAGGCTAGTGTATCTCCTTCAGCCACAGACCTTTCTTGACTGCCTCTCAC
Seq C2 exon
CTGTGCTCAAGTACATGGGTGACTACCCATCCAAGAGGACACGCTCTGTCAATGAGCTCACTGACCAGATCTTCGAGTGGGCAGTGAAGGCCGAGCCCCTCAAAGATGAGGCCTACGTGCAGATCCTGAAGCAGCTGACTGACAATCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078412=MyTH4=PU(34.6=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCACCCAAGCACAC
R:
TGATATGATTGTCAGTCAGCTGCT
Band lengths:
311-1132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]