GgaINT0104542 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192364408-192365473:-
Coord C1 exon
chr1:192365316-192365473
Coord A exon
chr1:192364562-192365315
Coord C2 exon
chr1:192364408-192364561
Length
754 bp
Sequences
Splice sites
5' ss Seq
TTGATATCC
5' ss Score
-7.71
3' ss Seq
CCTTAACTCCTGCCTCTCACCAG
3' ss Score
-4.23
Exon sequences
Seq C1 exon
GCCTCCCCCTAAGCACACCCTGAGCAGAGTTATGATCACCAAGAGCCGTGGAAAGGACAAGCTGTGGTGTTACACCCGGGAGCCCATCAAGCAGCCCCTGCTGAAGAAGATCCTGGGTAGCGAGGAGCTGTCCCAGGAAGCTTGCATGGCCTTCATTG
Seq A exon
ATATCCTTTTACTGCCTGGTGCAGCCCTTGGACAACAGGACAACAGGCCTGACAGACAAAGGACGATCAGGCTCTTCAGGGACACAAGTGAAGCCCATAGAAAGCCTTCTGTACCCTCTTAAGGGGGCTGTGTCACAGACTTGGAGATGAATCTGATTCTGGCATCTGTTTTCAAGCATCCTTGAGATGTGGGGTACAAGGAGCAAGTTATTATAGAATCATAGAATCATTAAGGTTGGAAAAGACCACTGAGATCATCTAGTCCAACCATCAACCTCATCCTTACCATGCCCATTGAGCCACTAAACTGTTGAGTCTTTCTGGTACACACTGCTTAGTAGTTAACTCAGCAGTTCTCTTTTGGCTTACTTTAACTTTCCAAGATGCATCTGCTGTAAAGGGAGTAGACCTAACCAGTGTGGATGCAAACCAGACCTCATGACCTCAGGGGCAGAGTTTGATACCTGAATATCGCTTTACTTGGCAGAATAAAGACAGCATGGAGATAGGCAGAGTGCAAATGTAGATCCGAGCTGTGGAAATGGCCTCTGTATTTTGGTGGGCTTTTCTCTAGGATCCAGACTTGATAGTTTGAACAGTTCTATTGGTATAAGCCTGGTACTAATGCTACTACCATTATTGCTACTATCACAACCAATTCTGTAATCAAGTGTAGGTTGTCTTTTACCACATTATCAACAGAAGGAGTTCTCCAAACCTCGCAGGTAGCTAATCCTTAACTCCTGCCTCTCAC
Seq C2 exon
CAGTGCTAAAGTATATGGGTGACTACCCATCCAAAAGGACCCGCTCAGTCAATGAGCTGACAGACCAAATATTTGAAGGTGCCTTGAAAGCCGAGCCTCTGAAGGACGAAATCTACTGCCAGACCCTGAAACAGCTCACTGACAACCACATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078412=MyTH4=PU(34.6=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCCTAAGCACACCCTG
R:
TTGATGTGGTTGTCAGTGAGCT
Band lengths:
310-1064
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]