BtaINT0098292 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57403959-57405622:+
Coord C1 exon
chr15:57403959-57404121
Coord A exon
chr15:57404122-57405466
Coord C2 exon
chr15:57405467-57405622
Length
1345 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
CACCATGCCTCTTCCCGCAGGTA
3' ss Score
11.16
Exon sequences
Seq C1 exon
GCTCCCCACCTGTGCTCAAGTACATGGGTGACTACCCGTCCAAGAGGATGCGCTCCGTCAATGAGCTCACCGACCAGATCTTCGAGGGAGCCCTGAAGGCCGAGCCCCTCAAGGACGAGGTGTATGTGCAGATCCTGAAGCAGCTGACTGACAACCACATCAG
Seq A exon
GTTTGCCGGGGTGGTGGGAGGGTGAGGAGAGGGTGAGGGGCAGGCCCCCACCCCTGGGGCTAACCGCTGAAGGTAAGACGGGGAGCTCACTCCCTGCCGAGGCAGCAGCAGCTCTGCCTGGGAGCCATCGTCCTTCATTTGGAGCAGGAAGGTGTCCTCGGGGCTCTCCCTCAAGGTCCATGGAGGAGGGTCAAGAACCAAAGGTGATGGCTGTGCCCTCGGAGTCTGTCCTCCCCCAAGTTGAACAGCCCCAGCTCCTCCTCATTTCCCGCTAACCCCTGCCTGGACACCTCCTCTGGACACCTGTCTCCTGCCCAGATGCCACTGTCTGCCTGTGGGTGCATCTCCTGAGCAGTTGTCCCGTCCCTCACTCAGGCTGAGCAGGCTGTCTGTCAGAAGCTCTGGCCATAAATTCTCATGGGCTGGGGGTGACCCGGAGGGTGTCACCTCCTCCCTGATGGTCCAGACTGTGGCAGGAGGGGGAGTCACACACATGCTCATCTCAGAGCCAGAGACAAGCCCCACTCTCTCCCCTTATTCCCAGGCCTCCACCTCCCTCCCTAGCCTTGTCACTCTCTCCATCTCTTACAAAAATCCACCACTGGACCACATGTCAGATCTTTTCACACAGCTAAACTTTTGTACATGCCCACAGCCAAGAAAACCTTTCATATCCTCTGCATGTTAGAATTTGCCTCATCCTTCCAAGCCTGGATCAGATGCCACCTCCTTCTGGAAGCCCTCCAAGCTTCCCTCTTTCCAGGCCCAGGGAGCTCAGAGGAGTGCCTGAGGGAGCTCTGGGGCTGGTCTAACTCAGTGCTGCTCAAGTAATCATGCTCATTGTGCTCAGTTGCTCAGTCGTGTCTGACTTTGCAACCCCCTGAACCATAGCCCGCCAGGCTCCTCTGTCCATGGAATTCTCCAGGCAAGGATACTGGAGTGGGTTGCCATTTTCCTCCTTCAGGGCATCTTCCTGACCCAGGGATCGAACCTGTGTCTCTTGCTTCAAGTAACAGGCGAGTTAAAAAGCTCCTGCCAGAATAAACCACATACTGCTTCCTTCATAGGAAAGTCTTGCTTAAAAAAACAAACAAACAAACAAACTTAACTGAACCCAGAGTGCTTGGTGACATAGTGATTTTCATTTTGGCACAAGCACTTTGCCTCCGAGTGACAAGTAAGTGTGTGGCCTGGGGCAGGTTGGTTGACCACACTTTGAGTAGCATATTTGGATCTGACTGTTGGGTGGGTGGGTCCATGTTGGTCTCAGAGAAGGGTGGGGGTGAGGGCAGGCATGTGCTGCCCTGGTGAGGAGCCCTGCTGGACACCATGCCTCTTCCCGCAG
Seq C2 exon
GTACAGTGAGGAGCGGGGCTGGGAGCTACTCTGGTTGTGCACAGGGCTCTTCCCACCCAGCAACATCCTCCTGCCCCACGTGCAGCGCTTCCTGCAGTCCCGCAAACACTGCCCACTTGCCATCGACTGCCTGCAGCGACTTCAGAAAGCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(34.6=67.3)
A:
NA
C2:
PF0078412=MyTH4=FE(48.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCACCTGTGCTCAAGTA
R:
CTCAGGGCTTTCTGAAGTCGC
Band lengths:
318-1663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development