GgaINT0104543 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198112616-198113054:-
Coord C1 exon
chr1:198112901-198113054
Coord A exon
chr1:198112772-198112900
Coord C2 exon
chr1:198112616-198112771
Length
129 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
CTGTATCTCTCCTAATTTAGGTA
3' ss Score
10.34
Exon sequences
Seq C1 exon
CAGTGCTAAAGTATATGGGTGACTACCCATCCAAAAGGACCCGCTCAGTCAATGAGCTGACAGACCAAATATTTGAAGGTGCCTTGAAAGCCGAGCCTCTGAAGGACGAAATCTACTGCCAGACCCTGAAACAGCTCACTGACAACCACATCAA
Seq A exon
GTAAGAGTTGTCTGTTTTGCTTGTCCCGGAGACACTAACCTGTGTTGGGCAAAGCATATCTGGAGCATTTTCCTCTAGTGCATCCATGCCATGAGTTACTTTTTCTGTTCTGTATCTCTCCTAATTTAG
Seq C2 exon
GTACAGTGAAGAGAAAGGCTGGGAGCTGTTGTGGTTGTGCACAGGCCTTTTCCCTCCAAGTAACATCCTCCTGCCCCATGTCCAGAGGTTTCTTCAGTCCCGGAAACATCACCCGTTGGCAGCAGACTGCATCCAGAGACTCCAAAAAGCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(34.6=71.2)
A:
NA
C2:
PF0078412=MyTH4=FE(48.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGGACCCGCTCAGTCAA
R:
CTGCCAACGGGTGATGTTTCC
Band lengths:
245-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]