MmuINT0104572 @ mm9
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105205821-105211238:-
Coord C1 exon
chr7:105211085-105211238
Coord A exon
chr7:105205977-105211084
Coord C2 exon
chr7:105205821-105205976
Length
5108 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTGGTCCTTTTCCCACAGGTA
3' ss Score
11.89
Exon sequences
Seq C1 exon
CTGTGCTCAAGTACATGGGCGACTACCCATCCAAGAGGATGCGATCCGTCAATGAGCTCACTGACCAGATCTTTGAGTGGGCACTCAAGGCTGAGCCCCTCAAGGATGAGGCCTACGTGCAGATCCTGAAGCAGCTGACTGACAATCACATCAG
Seq A exon
GTGAGCGGACACTGTGGGACCTCTTGAAGCAATTGGCCTGGGGCCCAGGGTCAACCTGTCAAGAGCCCAGAAGGGGTAACCCCCTTTTTTTCAATTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCGAAAGTACCCTATACCTTCCCCCAACCCTGCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAACATTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCTTCTGCTACATATGCACCTAGAGACACGAGCTTTGGGTGGGGGGCACTGGTTAATTCATATTGTTGTTCCACCTATAAGGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCTATCCAATAGATGACTGTGAACATCCACTTCTTCATTTGCCAGGCACTGGCCTAGCCTCACACGAACCCTTAGAACAGTCCTCCAAGGTCACAGCCCAGCCCTCCTGGCTCTCACTCCTAACATCTGCACTCACTCCGACTGAGGTGACTGTCAGCCCAATGGTCTGTCAGGAAAGGCTCCCATGCTGGGAGCATTGAGCCTACAGATCTCCCCCCTTCATTTCACTGTCCCCTCCGTGTGAGATGGTATGGAGGGCCTGTGACATAGGTAGGTAGGGAAGATGTCTTTACTAAAACCATAAAACAAGAGCTATTGGTATATGCTGCTAGAAAAGGGGCGAATTCCAAAAAACGTTGAGGCTATTCCAGTGCCTCTGAGGTAAGGCAGTCCAAGTAGGCTGTTGAACAGCTTGAGTGAAGGGATCCTGCCATTTGAGAGCAAATCGGAATGGAGGGTCTGGTGGATGGGGATGCAAATGAAAATATCCTTACGGTCTAACTCTGTCACCCAGGAGGGACTGGAGGCTATCTGTCTCCAGAGTGTGTAAGGACTGGGAACTGAGGAGTAGGTCAGGACCACAGCCTCATTTATAGCCCATTCCTAGGAGACTGGGGCCCATGATCTAGGCTCCACTTGACGTTTTGAATACCAAAGTAGGAGTGTTGCAAAGTGAGTGACAAGAACTTTTTATCGAAGAGAGTCTGTAAACCTTTTTGCACATTAGGCTTTAAAGGATATTGGGATTTTCCTTTGAGGAAAGCCACTTAAGGGCTTTCCTTAAGGGCTCTGGTAACCCAAGCTGTTACAGAGTGCTCAGGAGTGCAGGCATCCAGACTCTGGGAGCTTGTTGGTTTTGAGGCTAGAGCAGAGATGTAGGGAGGGTCTTTAAGGACATCACAGGACAAGAGTCATGCAGAGAGGAAGGTGAAGCTAAGCCTGGTGGAGCTCTCCCCTGATATCTACAGTGAGCTTGGGTTTGATAACCTACTGCTTCAGTCTGGCCCAGTAAGGAGGGATATCCTGTAGACCCAGTGTTCCCAGTACAGGAGACTTTCCAGACAGACCATTGTGCTTAAAAAGTCCTAGGTGGGTCTAGAGTTTAATCATGAAGTCCCTAACTAGGAAGGAAACAGGGCAGCTAGGAAGGCCTAGGAAGGAATGGATGGAAATGTGTTTATACATCATATATCATATGTATTAAGACGGGCATAGAGTGGGCTGGTTGGGACTTGCCATTAAAACCAGTGAGGATTTGAGTCTGGAAGGTCAAATCAGAAAAGGTGTTCAGAGCAGAAAAGTTTGCTCCATACCTAAAAGGATGTCATTTGGGTCCTTGCCTCATTTAGGGTTATCTGACGTTAATTCATAGAGATGAAAAATATGGGAGTCCATGTAGCCTCAGGGACCCTCTAGTCCATTTCATTAAGTACCCCCAGTCTGGGAACAAAATCAAGGCCATTTGTCCTTTTCCAGGTTTGACTTGAGTGTGAGATCCTTAGATGGAAAATAGATTGTCCCCCTTCTCAAGAAATAGAGGGATATTCATGCTTCTACTGGGCCTCCAGTCTGCAGTTTGGACAGGACCCCAGATAGCTTTGGGTACACCGACAGAAATGCCCAAGTTGTCCGCAATGATAGCAGGAAAAGCTCACTTATTCTAAGTTCCCATATACTGAAAACAGATATGAAGTGGGTTCTAGCTGGAGCTCCTGGATGCTCTTGGGATGGGCAGAGAGTGTCCTGAGCTGGCCCTTTGCCCCTTTCTTCCCCCACTTCTCCCTTTCTGGCCCTTGAGGTTCCTTTTTGGTTATTAAAATACTTCTGAGGGTGCATTTGGTAAAGTAGGGAAAAGAGGTCTTGGGTCCCTGGTCTGGTTTTTATAGGCCTGGCTTATAAACTCACAGCCAATATTGTTGTGGCCCTTGAGGTCCAGACTGGTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCTATTCTATTCCATTCCATTTAATTTTTTGGTCTTTTGAGACAGACTAGTATTCCTGCATTGCTTTTGCTAGTCCAAGCTGAAAGATGCTCAGGTTCTAGGGCGATCCTGTGTGACCTCCTGCATCTTGTCCTGGTTAGGATACTTAACAATGACCTTTGTCATCCTCCTACTGGGCAGGCAAATATATCCATCAGGTCCTTCCCCCATTGCCTTTTACAGTGGTGGCCTGATTTGACCAGTTCAATTCTGTGACAGGTGTCATCGTAGAGGCTGGCTTGACTGTGATGTAGTTAAGAGCCTGGGTCTCCACAGCCCAGGCGCATGCTAAGGCCAGGTAACTCTCCTCACACACACAGCAGGTGGTTAGGGAGGTAAAGGTTTTGGCAGGTTAGGTCAAAGCCATTACAAACCCTTTGGTTTCCTTAAGGAAGGTAGAAGGATTTTGGGTAAATGGCTCCAGTTTATGTTATTTGGGACAGATGTGATTGGTGGGAGTGATGATTACCAAGATGATGCAGAGGCCCTGTTAGCCACTTTGTAAAGGAAAAGGATATTCTAGGAGGGAGAGGAGGTGAGTCCCTTACATGCAGTTCCCGAGTGACCACGAGAAAGAAAGTGCATTATGTGGGTAAAGAGAAAGGGTTTGGAGAGAGCTCCCCAGGGAGAGAAGAGAAAGGAGGTTTGGGGGAGGGGTTTGGATATGCCCCAAAGAAGGATCAGGGATGGGGCTGGGTTTAAGGAAGATGGGCCTAGTTTAAGAGTGTAAGAGTTTAGCAAGGCACAGTGATATTCCTCCCACAGTGCAGGATTCTGTGACAAACCAGGGCATCCTTCCAACCCCGGAAGTAGAACTCAGTTTCCCTCCAAAGCCAAGCCTCTAGACTGGAGCAACCCCAGGGAAAACCACAAACTGGTCCTGGCCATGAATCAGTCCTGAAGGAGAGGGGGACTTGTTCAGGAGTGAAACCCTGGCTATCTGCGAGCCTTCAGATCAGGAACACTGGACAGCAGGGGAACCCACAAGTGCATGTCCAGTCAGCCACACACTTTGTCCCTTCCCACGCTGCAGAGCAGCAGACGCTGGACTGTGGGAAGAAGGGTGGTGTGTGGTGTTGCCTTGGCCCAGCTATCACCACCATCTGGGCAGGGCATAGGGGGTAAGGAGGTCCCCAGAGGAGAAGGCAAAGCGGACTCTTGTCCCTATGGACTATGGCAGGCAGCCTTCCTCTATCACCCTCGGGTGGGAAGTAAGACTTTCTTCCCCAAGGGGTTAAAAAATGTCCGTGCCTGCCTCAGAGACCTGCCACGGACCATCAACTGTCTCTGGGCTACTCAGGCAGCCACCATAGGCACCAGGTTAAGTAGCTAAGAGAGGCAAGGCAAGAGTCCCCTCCCCAACTCCTGTACAGGCCACTGAAATGCTATGCAGGGCCAAGTCTGAAGAGGCCGGTGATTCGGGTGGGCAAAGAGCTTAGCTAGAGAAAATAAGCAACGGGGAGATTTACAGAAACAAACTGCCAGGAGTTGGTGACTGAGTTCCCAACGAGCTCACGCTGGGATAGAGAGAAAGCCCCCCCCCCTTAGGGTGGTTAAAGGGACAGTCATGATCTCACCATATGAGACGCCTGTGCCTACCTCACATCCAGATGGTTAGCTGGGCGATTCTTCATTTTGCAAAGAGCGGAGTTTTGTAGTATATGCTCTTCCTTTTGAGGACCAGCTGTCTGAGACTCCATGCGTCACTAAGGGTCAGTCTCTAGATGGTCTGAGCTGCCTGATGAAGTGTAGCATCTTCTACAGTGGTGCCAGGATGCCTGGAGACAGATTGCAACTGGGGCTTGACATGATTTCATTTATTCTTTCTGATGAGATACCAGCCTCGCTCTCTGGAAGCAGCAGAGACCTTGGTCTAAGTCCAGCCTGCCTTGAGGTAGTGAGTGCCTAGTTCTGAGACTAGAAGAGCCCAGCATAACTATCTGTGTCAGAATAGCAGACACATCTTCCCATCTTTGCAAGATCCATCCTGGAGGCAAACACATCAGATCTCTTCACAATGCCGGGTCTTCTCCTGGGCAGGATCACCTTTCATCTCTGTGTGTCAGAATTTGTCTTGTCCTTCAAAGCCTATGTCAATACCACCTTATACAGAGCCATGTATGTCAGTACCGCCTTATACAGAGGCCTCCAGGCCGCCCTGCTCCATCAGGCCTAGTGAACCAAGGGGTGCATGAGGGTGTAGGGTCTGCTTTAATGGTATAGGTGAGTCCTAGTGCTCAGCAGGTGTATAAGCAGCACACTTACTTCTGTGTTGTTTCTCGGGATGTGTGGCTTTGAGGATGAAATCTCAGCCGACCCAGACAGAGTGCTGAGTAACTGTGGACTTTCATTCTGGCACCGGAGCCTTGTGTCCCTGTGGACTGGCTACTGTATGACCTGGTATGGGCTCATGGCCACACTGAGGAGCACTGTTTGGTTTCAGCTGTCATGAAAGTGTGTCCGTTTTGGTCCTTGGACAGAGGCTTAGCTCCAGGGTGCACGGGTCCCTGTTACTCTGGTCCTTTTCCCACAG
Seq C2 exon
GTACAGCGAAGAGAGGGGCTGGGAACTGCTGTGGCTGTGCACGGGCCTCTTCCCGCCCAGCAACATCCTCCTGCCTCATGTTCAGCGGTTTCTGCAGTCCCGCAAGCACTGTCCTCTTGCCATTGACTGCCTGCAGAGGCTCCAGAAAGCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-Myo7a:NM_008663:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(34.6=71.2)
A:
NA
C2:
PF0078412=MyTH4=FE(48.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: