BtaINT0098294 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57406133-57408290:+
Coord C1 exon
chr15:57406133-57406238
Coord A exon
chr15:57406239-57408176
Coord C2 exon
chr15:57408177-57408290
Length
1938 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CAAGTGCCTCCCCGCACCAGGCC
3' ss Score
4.91
Exon sequences
Seq C1 exon
AAATGGGTCCCGGAAGTACCCCCCACACTTGGTGGAGGTGGAAGCCATCCAGCACAAAACCACCCAGATTTTCCACAAGGTCTACTTTCCTGATGACACTGACGAG
Seq A exon
GTAAGGGACTCTGGCTTCTTCGTCTGTGGGTGCCCCTGAAGGACGTGGCTCCCTTGGGGACATGGGGCAGCCCTGATGCCTCTCCCCTACCACCCCCATCTTTGCCCCCATTGTCCTGCCCCTCAGTGGAGCTGGGGCCATAGACTCCTTGGGTCAGGAGCCCTTGGGTTCCTGGTCTAGCCTCCCACTAACTGGATCAGCTTCCTTGACAAGGTCATCCCTCCCTTTCTCGGAGGAGTCTCTGTCTTGCAGGAACGTGCTTTCTCCCTCCGAGTTGAGCTCTGTGTTGATGTCACCTCCCTAATGCCCATTCTGTTCCTGGGCACAGGCCTGCCTGCTCCACAGCCCCAGACCTCCCCTGTTGTCCTAAGTCCACTCTCCTGCAGATCCCTTTCCTCCTTTTCACTTGACCTGTGAGTCTCCTCTACCTTGGTCCCCTGGGCAGAGGTCTTATTTGTCTTCTTGTCACACCCATTTGGTCAGGCTGACTTCTGATCTATTCTCCCTTCCCCATCCCAGCATAGCATCTCATTCAGATAAACAAGACCAACATTGAAACTTTTGGTTTGAAAAGCAGCTTAACAACTTGTTTAGAGACTAGAGACTCAGAAATACTATTTTAGGATTCTAGACACAAGGACAGAAAATCTTGCTAAAATCCTTTCCTGTCCCTGGTGGAAGGTTACATGGAACATCCCCCCCGACCCCCAAACTGCCCTCCTTCTTCTAAACTTCCCTGGACTCACCTATCCCTCTCAGCCCGTCTGGGCGGCTTCCTCCCTCATGACGCCTCACCTTTCTGGAGTTTGTTTTCTCCCTTCTTCAGTCTCTTTTATTCCACCCGCCCTGTCTCTTCTGCGCTTCCTTGGCCTCTGCCGTCACTCACGCTTGTACAGCCACACCCAGGACCCTGGAGGCCAAGGCTTGAAACTTCTTGGGGGGTTGGGAAGGGCACCATCTGGGAAGATCCAGACAGGAGGTGCTTTTACTTTTTTTTTAAATTTATTTTTAATGGAAGTATAGTTCGTGTACAATATTATGAGTGTCAGCTGTACAACACAGTGATTCACCATTTTAAAGATGATTTTATTTATTTTTTTGGCTGTGCTTGGTCTTCGTTGCTGCGCAGACTTTTCTCTAGTTGCGGTGAGCGGGGGTTGCTCTTTGTTGCGGCGCAGAGGCTTCTCACTGTGGTGGCTTCTCTTGTTGCGGAGCACAGGCTCTCGGGACGCAGCCTTCAGCAGTTGTGGTTCCTGGGCTCTAGAGCACAGCCTCACTAGTTGTGGCTCACAGGCTTTGTTGCTCTGAGGCATGTGGGATCTTCTTGGATCAGGGTTTGAACCCATGCCTTCTGCATTGGCAGGCAGATTCTTTACCATTGAGCCACCAGGGGAGCCCATGAATCACAGTTTTTCAAGGCTGTATTCCATTTATAGTTATTATAAAATATTGGCTATATTCCCTGTGTTGTACAGTATATCCTTGTAGCTTGTTTCTTTTATACATAGTAGTTTGTATACTGGAGAAGGCAGTGGCACCCCACTCCAGTACTCTTGCCTGGAAAATTCCATGGATGGAGAAGCCTGGTAGGCTGCCGTCTCTGGGGTCGCACAGAGTTGGACACGACTGAAGTGACTTCACTTTCACATTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGCATTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTAGGCTGCCGTCTCTGGGGTCGCACAGAGTCGGACACGACTGAAGTGACTTAGCAGCAACAGTTTGTATACTTAAGCATTGTGCTGAGCTCTGGGGAAGCCCCCTCAGAAGGAGGGTGTCTTGAATGGGAAGGGGCTCTATCTGAGGCCCAGCCATTAGAGGTGCAAGAGGCCCTGCCGGAGCCCAGCAAGTGCCTCCCCGCACCAG
Seq C2 exon
GCCTTTGAGGTGGAGTCCAGCACCAAGGCCAAGGACTTCTGCCAGAATATCGCCGCCCGGCTGCTCCTCAAGTCCTCCGAGGGATTCAGCCTCTTTGTCAAAATTGTAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
A:
NA
C2:
PF093795=FERM_N=FE(39.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGGTCCCGGAAGTACC
R:
TCTACAATTTTGACAAAGAGGCTGA
Band lengths:
216-2154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development