MmuINT0104575 @ mm9
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105204301-105205356:-
Coord C1 exon
chr7:105205251-105205356
Coord A exon
chr7:105204415-105205250
Coord C2 exon
chr7:105204301-105204414
Length
836 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGAGTGTGTGCTACCCCTAGGCT
3' ss Score
7.8
Exon sequences
Seq C1 exon
AAATGGCTCCCGGAAGTACCCTCCGCACCTGGTGGAGGTGGAGGCCATCCAACATAAGACTACCCAGATCTTCCACAAGGTCTACTTCCCCGATGACACGGACGAG
Seq A exon
GTGAGGGCCCCCACATGGATCTGACCCCTCTGACAGGGTCAAGCTCCCTCAGCCTGCACAGGGTGTCTCTAACAACACCTGACACCCTGACATCTCAGTCTCTTGCCCTTGGGTAGAACAAGACTTGATCAAGACTATAGACACTCCTTGGATTAAGTCCCTTCCATTTGGACCTTCACTTCCTCCTCCCTGGCTCCCCAGTCCGGCTTTCTGCCATGAATTTGACATCTTACCTTGGATCCTGATGTCACTGTATCTTACCTTGTACCCTCATGAGTAGTTATAATACTTGCCTGATCCTGGAGACTCAGATGCCACAGTAGGATTCTGTGACAAACTCAGACATTTCCCAGAATCCTTTCCATCTATAGTCTGTCCCATCTCTCCTTCCCTCTCGCCCTCAAACTCCATCCCCTAATTGTCACAGTTGGGGCTGTTTTTCCCAGTCCATCCTCTTGGTTGGTTTTCTTTCTCAACCCCTCCTCCAACACACACATACTACTGTGAGTCCCCACCTCTGCTCTCACTCTCCAGGCCTAGGCCTTGAGGGCCAGCACCAGGACTAGTCCTGTTTGGAGGGCCAGGGACAGTGAGCTCTGAGAAAAGCCAAGTGGGAATTGCTCTCTTCAAATACTACATGCAGATCGGATCCACCAGGATGACCCAACAGGGAGGGGTCCTGAAAGGGAGGAACTCGGTCTTGGTCGGTTGGTTGGTCAGTCAGTTGGTTGGTCAATCGGCCAATTGGTTGGTCCGGTGGGTAGGAGAGACAGCAGAGATCAGCAGTGGGGAACTGGGGGAAGGTCTTGCAGAAGTTGAGTGTGTGCTACCCCTAG
Seq C2 exon
GCTTTTGAGGTGGAGTCCAGCACCAAGGCCAAGGACTTCTGCCAGAACATCGCCAGCCGGCTGCTGCTCAAGTCTTCCGAGGGATTCAGCCTTTTTGTCAAAATCGCAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-Myo7a:NM_008663:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
A:
NA
C2:
PF093795=FERM_N=FE(39.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGCTCCCGGAAGTACCC
R:
TGCGATTTTGACAAAAAGGCTGA
Band lengths:
214-1050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: