GgaINT0104545 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192362204-192363919:-
Coord C1 exon
chr1:192363814-192363919
Coord A exon
chr1:192362318-192363813
Coord C2 exon
chr1:192362204-192362317
Length
1496 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TGTTCTTCCTTTCTTTGTAGGCA
3' ss Score
11.69
Exon sequences
Seq C1 exon
GAATGGGTCCAGAAAGTACCCTCCCCATCTTGTAGAAGTGGAAGCCATTCAACACAAAACCACCCAAATTTTCCACAAGGTTTACTTTCCTGATGACACTGATGAG
Seq A exon
GTAAGTGGGATAGAAGGAAATTCTTAATTTTTGTCAGGGTGGCTGTCCAAACTTTTACTAAAATCTCAGAAGAGATTTATTCTAGTGCAGAAAAATTCAGCCTTCCACAAGTGTCTGAACCAGAGCAGTGTCAGGAAAACCCATTCTTACCAGGATAGGAGACTGGAGCTTAGGGGTCTGATTTCCTACAGTTCACCTTTTCAAGACATGGATGCAGAGTTGGCTCTCACTGGGGATTTTATAATACGATCTCATAAAGAAGGGAACATGTTGTGTTCATCTCCATCCTCTTTCTCAGTGGTTCAGAAACTTTGGCCATCAGTTATTTAGAACCTAGACTAGAGTCCACCAAGCTGTGCCTAGCCAGGCACTCTGCTGGGGCTCCCAGTGACAGAGCAGGGAGCTGGCAAGCAAGAAAATGCAATTATTTCTCATTCTTCTGACCTGAGATGACACAGAAATCATGGTACTTGCGCTCAGAAACCTCTCATTAAGCATCTTACACACGAATAAGGCAGGTAGTGATATTGTTGCTGGAAGCAGATAGGATTCTTCTTCAAGATATTGCTGTTTCATGTTACTGACTGGTATTCCAGTGAGGCTTGCTGTCTTCCATCATGCCCTTAGGTACACCTAAGTCCTTGCATTTCCAAAGGATTTCATGTAAAAAACAGTTCATATCCATTGGAGGATGTGAGCAGTAGCTATGTATGCCCATGTTTGTCTGTTACAGGGATTTTAAGAGATTTACTGGGACTTCCCATCACTCTGAGTTTTGGATTTTTTTTGTATATGACCAGTAACAAGCATGATACTACTTTATACACATACATCTGTGTGAGAGCCAGGAGAAGGAGGCAGAGAGAACTTCTGCACTTGGATGTGGTCCCTTTGACCATGGAAGTCATCCAAGTGGGCTGACAAAGCCATGTCACTATGGTACAACATGCATCTTTCTACGTCTCGTGAGATGTAGAACATGGGTCCTGGTCGTTCAGGCTAACAAGGTCGTGCATGTGGTGGGTAGAAGTCTAAAGTATTTGAACTGCTGTGAAATGAATCTCCTTAAGTGGCAAGAGGAAGCCAAGTCACTGAAAATTCTAATATCTCAGAAAGTGGGAAATGGAGAGATATCATCAGTGAAGAAACAACTGGGACAGATCAGCCTGGAGGTCTCTCTCTCCTGTAGACAAATAGGTCTGAGATGTTACAAATGGATCAGAAAAAAATCTCTTGCATTACCTTGGAAGCCACTACACAAGTCAACACAGAGTGTAGATGTAGTATCCTGAATCACAACATTTCACCAATAGTATGGCTGAACTTCTACAAATCTGCCTTCCCATGTGCAGAGCCACAGTCCACGAAGTCACTGTCTTCATTGGTGGTGTGCACCTAGAGCTCTTCATACATCTGAAGTTAGAGTTCCTCAAAGAGAGCATAAAACAGAAATTAATCTCGAGGTAGCAATGATAATGTTCTTCCTTTCTTTGTAG
Seq C2 exon
GCATTTGAGGTGGAGTCTAGCACAAAAGCAAAGGATTTCTGCCAGAACATCTCCAACAGACTGCTCCTAAAGTCTTCTGAAGGCTTCAGCCTCTTTGTCAAGATCTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.6=22.2)
A:
NA
C2:
PF093795=FERM_N=FE(39.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCCAGAAAGTACCCTCC
R:
TGTCAGAGATCTTGACAAAGAGGC
Band lengths:
215-1711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]