DreINT0101050 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3172658-3175006:+
Coord C1 exon
chr18:3172658-3172763
Coord A exon
chr18:3172764-3174892
Coord C2 exon
chr18:3174893-3175006
Length
2129 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
TTTGTTATGGTGTGTTTCAGGCA
3' ss Score
9.15
Exon sequences
Seq C1 exon
GAACGGCTCCAGGAAATATCCTCCTCACCTAGTGGAGGTGGAGGCCATTCAACACAAAACCACGCAGATCTTTCACAAGGTTTACTTCCCTGATGACACAGATGAG
Seq A exon
GTCAGACTCGTTCATCTGCACAGGACAGATTGAGCTTTTCATGTGGTTCTGATGTGACGCTTATTAATGGGACGTCTTGATATTTAAGAACGCTAACGTGACTATCGTTACATGAAATAAGAGCTTCACATTTCTGCTTTTAACCCTGCAGGATGTAATCGATCAAATAATTGACTAAAGCCGCCTTTCCACTGCACGCGACATTTGGACACGACTGTCAAAATACGCCCCCTTGTGGCAGTCGCACAGTATTTTCAGTGTTGTCATGCACCATGGGAGAGATTCTCAAGCTGCGTCAAATGGCACACTATACACTATGCACTCATGCACTCATGCACTATGTACTTATGCACTTACACACTCAACAGGATAGTATATGTTTTAGTATAGTGTTGTCCCAAATGGCACACTAATGTTTTTTTACTAAGCGAAAATTCAAACCGTTTCCCTGATGACGTTTGACGGTTGCCAAATCAGTGAAATAAATGAGCAAACTATCAAATAATATCTGCCGTGAGTATAACCGCATTCACCATCGGGAGGCGCTATAATCACTCTCGCAGGAGAACTTTGCTTTCACCATCCAAACTAAATAAAGTTATCCAACATGTGCGCCCGATAGCTCCGCCCCTTCCGCTACGTAAGCAAACCTGCGGTCGTTGAGTGCGGGAAGTGTCCATCATTACACACTTCATTTTAGCGGCTGAATAAGCGCATCATCCGGGTAACTAAAGTGCACTTATTATTTTTAGAGTTTTCAGTGTGAACTTATTACTTACACTATTTATACTACAAAATGGCGTAGAATAGTGCATAAGTATGCGATTTGGGACGCAGCTATTGTGTCCGAAATAAAAGAGTGCAAAAGCAAGAGCCTTTATTCTCTGTGCTTTGGCATGGTTTATTAAATGAATGAATACTAGTAGAAACTCATAGGCCGCTAAAATATTGGAGGGAATGTGTAGACAACATTAAAAAATATTATTTTATTACTTTCTTACTTACATTTAAGAACAGAAATGTTCTTTTTTTAATATAGACTTTTTATAATTCAAAAAATAACCAAATAAACTCCTATTTCCCATCTCGCGCGCACGGACCTGCTTGTATAACACTGGAATACATCACATCCAGTCGGCCGGTCGCATACAGTCTAGTCACAGAAGTTCAAATATTTCAACGCATCCGCAGCTCAATTCGGAATTTTCCGCATACGGAGATGATCGGAACTTCACGCTGCTCCCGGACTACTCTCCATTGGAAATGAAGGACTTCCGGTCTGTTGCTTGTCGTTTGTCGTGTGCAGTGGAAAGGAGGCTTAAGACAGTAAATTATTTATACTAGTATATAAAGTATATATAGTACAGGGGTGTCCAAACTCGGTTCTGGAGGGCCAGCGTCCTAGAGAGTTTAGCTCCAACTTGCTTCAACACACCTGCCAGGAAGTGTCTAGTATATCTAATAAGAACTTGATTAGCTTGTTCAGGTGTGCTTGATTAAGGTTGTAGCTAAACTCTCCAGGACACCGGCCCTCCAAGACCGAGTTTGGACAGGAGTTTGTGATAAATCATGTTAAAAACATACTAGCAACAAGCTAAAACATGCTAGGATTGTTGAATCATGCTAGATATTATTCTCATAAATTGTTAAAAACATTTTAAAAGCCATCAACTGTTTTCTTAGGCATGATATTAACAATATATACATGCTACAGTAGTAGCAGTATGGTAAATCGTGATACAAACATGCTAAAATTTTTCATATAGTTAAATCATGCAAATAAATGTTTGCAAGCTGGAGAAACATGCTAGCAGTTTGTAAAAATGTTCTAGCAGTTTCCAGAAACATGTTATGTGTTAAAACATGTTAGTAGTGTGTTCTTTAATGCAAGAAACATGGTTGCCAATGTTGAAAAATAACAGTTTGCACTTTCCAGTTTGTTTGCTAACCCCCATCTGCTCTCACCTATGTGTGTCGTACAGTTTTTTTACGCACAGTTATTTTTCGTGCCTAATTGCACTCTATTATATTGTAAATCGCCTTGAATGTGTGTTATTCTCAAATTTTTAATTTTGTTTTCAGACTTGATTGTGAGTGTATGACGTGGCTTTTGTTATGGTGTGTTTCAG
Seq C2 exon
GCATTTGAGGTGGAGTCCAGCACAAAGGCTAAAGATTTCTGTCTGAACATCTCCAGCAGACTCTTACTCAAAACACCAGAAGGCTTTAGTCTGTTTGTCAAGATCTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.6=22.2)
A:
NA
C2:
PF093795=FERM_N=FE(39.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]