BtaINT0098319 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4898601-4899945:-
Coord C1 exon
chr2:4899832-4899945
Coord A exon
chr2:4898754-4899831
Coord C2 exon
chr2:4898601-4898753
Length
1078 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCCTGTGCCCTTTGTTGCAGGAA
3' ss Score
10.8
Exon sequences
Seq C1 exon
GGTGACCACGTGTGGCTGAACCCCACCCCTGCTGACAAGACCAGGGTGGCCATTGGGGGTATCATCAAAGAAACCAAGCCTGGCAAAATTTTGGTTGAAGATGATGAGGGCAAG
Seq A exon
GTGAGTATGGCTATACATTCCTCAGAGGCTCAGCCTTCTCAGCTCCCGTCCAGAACCCTGAGCCCCCTCCCTTCTCTGGTGCTGCTCCCAACACCAGGGATTCTAGAGCCCAAGTCTGGGAACCACGTGGCAGGATAGACCACAGGGGAGTCCTGTGACGGCGGGCATTGTGTGTCTGTCTAGGGAACTGTTTCTATAGGGAAGAAGCAGGGAGCAGGTTGGAAGACGGAAAATTAGGACAATTAGGGGAGCAGGAAAGAGTGAAGTGGGAAAAGGGTGGGGGCAGAGAGGGGGAAGGGCCAGAAACTTGTTTTCAAAGTAATGCAAGGTGAGCAGGAAGGACAGGAGAAGTGAGGGAGAGAAAGGTGCATGAGAAAGATGCCTGGATGGGGGCCCCCAAGCACATGAGGAGGAGAAGGAGACCCATCTCACATGAGCAACGCAGCCCAGATGATAGAGTAGGAAGCTCAGGGTGACCTGTTGGGGAACCAGCTTGGTCACCTGGCAAGCTGGGGAGGAGCAGGGGAGGGACAGAGGGGAAGGACTTGCAGACTGGGGCCTCCAGCTGGTCACTGAGGTCCTCCCTGGGCAGCCCTCTTTGCTGAGAATCTGCAAAGTGAAGCATGTAGAGACTTGGCCTCCGAGGAGAAAATTCTAGAGTGTGACCTGTGAACCCTATAGTATGTAAGTCAGTCAAATATTAACAATAATGTCTCCTATTTGCAAAATGACATAACATCATTTATATTAAAAACACTTTCTTGCACACTTTTATCCCAGCCATCTGTGAGACCCCAGCTGCAAGCTGCCCCGATCCCAATTGTAGCCATATCTAACTCCCGGCTCTACACTCCTCTGACCCTGGTCTGAACTTCACCCCTAGCCCCAGTACACACTGACCCCTGGCCCTAGACACGTGCTGACTCCAGCCTCAGCTTGACTCGATCCTTTGACCTTCACCGCAGACCAGCCCTGGCCAGGTGCGGGCCACCAGGTCAGCCAGTCCATTGAGGACATGGAGGAGAGTTTGGCCCTGGCAGAGGTCACCTCTCAGGAGAGCCTGTGCCCTTTGTTGCAG
Seq C2 exon
GAACACTGGATCCAAGCAGAGGACCTTGGCACTCTCAGCTCCATGCACCCCAATTCAGCTCAGGGCGTGGATGACATGATCCGCCTGGGGGACCTGAATGAGGCAGGCATGGTGCACAACCTCCTGATCCGCTACCAGCAGCACAAGATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(4.2=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTGTGGCTGAACCC
R:
GTAGATCTTGTGCTGCTGGTAGC
Band lengths:
262-1340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]