RnoINT0097435 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24802745-24804114:-
Coord C1 exon
chr18:24804001-24804114
Coord A exon
chr18:24802898-24804000
Coord C2 exon
chr18:24802745-24802897
Length
1103 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
ATTTGTGCCTGTCATTACAGGAA
3' ss Score
8.09
Exon sequences
Seq C1 exon
GGTGACCATGTGTGGCTGGACCCTCCCTCCAGCAACAAGACTGGTGTGGCCATTGGAGGCATTGTCAAAGAAACAAAACTGGGGAAGACCTTGATTGAGGATGACGAGGGCAAG
Seq A exon
GTTGGTATTGGGGTTCCTCCCAAAATCCCTCCCTATGGGACTCAGGCACTCACTCACCCATACCATCAAGGAAATCCATTTATCCCCCTGGGCAGGATAGAGTACAGTGGGTCCTGCCTTGATGAAAGGACGTGTTTGCCTTAATAAACTTTTGAGACTAGCAGTTGAGAACTATTGGGGGGGAAGGTTGAGGAGATGGGATGAGGCAGGGAGGGTAGAGGTCCAAAGGCTGAGGTGCAGAGGGGTCTTTGGCAGAAGGGACAGCCTGGTGAGCAAGGTGCATGGATGGGGAGGCAGAAGGGACAAAAGTGTCCAGGTTAGAAGTGGACAGCTCAGAGCAGATGGGTTAGAAGCTAATCTATCTGAGTATAAGACAGGGACAGCCTGGATGCTTGAGGGGGCAAGCATCCAGCTGGTCACTAACTCCTCCTCAGGCCAGCCTCCCTGTCCCCCAGGGGATCTAGGGAGAGTCACATATAGATACCGACCTACAAAGTGAAGGTTCTGACTGAGCCTAGGACCGCCAAGGACTTGAAGTCTATGAAACAACAATAGCCAGGTGGTGGGGTGCATGCCTTTAATCCCAGTACATGGGAGGCAGGCGGATCGCTATGTGTCTGAAGCCAGCCTGGTCTATGGCGTGAGTTCCAGAACAGCCAAGGCTACACAGAGAAACCATGTCTCAAAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACACAAAAAAACCCAAAAAAAACAAAAAACAAAAACAAAACCACCACCACCACCACTACTACCAACAACAACAGTATTCCTTCTACTCAAACAGTTCTGTGGAATTTTAAAACTGCTATTACTTACACCATTCCGCTCCAAAGGATTCACAAGGTCTCTGCAAACTCCCAGCTGCTGGCTCTCACGTGCCTCTCTGAAGCTTATTCCAGCCCCAGCTCCACACAGACCCCAGTCCCTTAGACAGATGCTGACCTGAGCAAAGCCATAGACGGATCTGACTTTGTCACAGGATACCTGGCTAGAGAGGCATCTCAGCCCTGAGAATGTGGAACAGAAGGGTGCAGAGGGCAGGCCTAGGTGGAGATTTGTGCCTGTCATTACAG
Seq C2 exon
GAACACTGGATCTCTGCTGAAGACCTCAGCACCCTCAGGCCTATGCACCCCAACTCGGCCCAAGGAGTGGATGACATGATTCGCCTGGGGGACCTGAATGAGGCCGGTGTGGTACACAACCTCCTGATCCGATACCAGCAGCACAAGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(29.8=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTGTGGCTGGACCCTC
R:
ATAGATCTTGTGCTGCTGGTATCG
Band lengths:
262-1365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]