GgaINT0031390 @ galGal3
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2269779-2271073:+
Coord C1 exon
chr9:2269779-2269892
Coord A exon
chr9:2269893-2270920
Coord C2 exon
chr9:2270921-2271073
Length
1028 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TGCTGCCTTTCCTTTTTCAGGAG
3' ss Score
12.71
Exon sequences
Seq C1 exon
GGTGATCATGTGTGGCTGGAAGCTCAGCCACACAGTGAATTTAATGTCCCTATTGGGGCAGTTGTGAAGGACTCTGACTCAGGACGGATCCTGCTGGAGGATGATGAAGGCAAG
Seq A exon
GTGGGCTACCCTGTAACTTCCTGTAAATAATGAACATAAAAATCAAAAGTAGAAAGTACAGAAGAAAAGCTATACTGGATCAGACTGAAGCATCTAGACAGTCTGACTTTGATAATGGCTGGTAGGATAAACAGAAAGTAGTAATATAAAAATAAGGCCAGAATAGGCTGATAGTAACCAGAGATCCCAACAGTATGAAGATTTAGCGCTTCTTGAGGTAGCAGTTATCACCAGGTAGCTAAAAGCAGGAAACAGACAAGCTCTAACCCCAAAATTTGATAAAAATCATGATCCCACTAAAGGCAGCAGTTTCATCCCTACTTCAAACGTGTTCTGGCAGTAACAGTCTGACAGAACTGCACTGTGAACATAGGTGATGTCAGGCTTCCCACATCTCTCACCTGAACATTTAGGTGGGGATCAGGAGAGCAAAATCTCTCCCACTGTAAGGGCAAGCAAGTCCAAGACCACCCGATGAGATTGGATGTGTACAAGAGACCTCGTGGGGCGACTTCATTGCAGCCTTCCAGTACTTAAAAGGGAGCTTATAATCAAGGGGAATGGTTTTAACTAAAGAAGGGGATATTTAGATTAGATGTTAGGGGGAAACTTTTTACTCAGAGGCAGTGAGGCCCCAGCACAGGCTGCCCAGAGAAGCTGTGGATGCTCCAATCCTGGAGTTTCCCAAGGGCAGGCTGAGGGGGGCCCTGGGCAGCCTGATCTGGTGGGGGGCAACCTTGCCTACAGCTGGGATTGGAAGTGGATGATCTTTAAGGTCCCTTCCAACCCAGGTCATTCTCTGATTCTCTGATGTCTGGAACCCATCTGAATGGCTTTGTCTAGGGTTTTCTATCATCTGGTCCTGTGGAGCAACACACCTCTTGATTGATGTAGTTCAGTCAGCTGTTTGTTAGAGTATACTGCATTTAATGTGAACTCAAAATCATTCTGGTCTAACATGGCATTCTCCTTTATTTGCGTCTAAATAAAGAGACTAACCCATTAAAATGCTGCCTTTCCTTTTTCAG
Seq C2 exon
GAGCACTGGATCACAGCTCGGAACATGCACATGGTTCGCCCAATGGACCCATCCACTGCACAAGGGGTGGAAGACATGATCCGTCTTGGGGATCTCCACGAAGCAGGCATGGTGCATAACCTCCTCATCCGCCACCAGCAGCACAAAATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(4.2=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCATGTGTGGCTGGAAGC
R:
AGATTTTGTGCTGCTGGTGGC
Band lengths:
263-1291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]