MmuINT0104610 @ mm9
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32173858-32175199:-
Coord C1 exon
chr18:32175086-32175199
Coord A exon
chr18:32174011-32175085
Coord C2 exon
chr18:32173858-32174010
Length
1075 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
GTTGGTGACTGTCATTCCAGGAA
3' ss Score
4.44
Exon sequences
Seq C1 exon
GGTGACCATGTGTGGCTGGACCCTCCCTCCAGCAGCAAGACTGGTGTGGCCATTGGGGGCATTGTCAAAGAAACAAAACTGGGAAAGACCTTGATTGAGGATGACGAGGGCAAG
Seq A exon
GTTGGTATTGGGGTTCCTCTCCAAATCCCTCCCTATGGGGCTCAGGCACTTGCTCACCAATTCCATCGAGGAAATCCATTTATCCCTGGGCAGGACAGAGCACAACGGAGTCCTGCCTTGATGAAAGGATTCGTTTGTCTTGATGTTTTGAGAATAACAGTTGAGGACTGTTGAGGGAGGAGGAGGAAGTGAGGTAATGGGATGGGGCAGGGAGGGTAGAAGACCAAAAGCTGACCTGCAAAGGGATGGAGGCAGAAGGACAGCTTGATGAGAAAGGTGTGTGGAGGTCCAAAGAAAGAACAAAAAGTGTCCAGGTTAAAAGTGGACAGCTCAGAGCAGTTAGGTTAGAAGCTAATCCATCTAAGTATAAGACAGGGACAGCCAAGGACAGTGGGGGGGGGGGAGCATCCAGCTGGTCACTAACTCCTCTTCAGGCCAACCTCCCTGTCCCCCAGGGGCCCTAGGGAGAGTCACATGTGGATAATGATGTAAAAAGTGAAGGTTCTGTTTGTGACTTAGACCACCAAAGATTTGAAGTCAATCAAATAATAACAATAGCCAAGTGCTGGTGGTGCAAGCCTTTAATTCCAGTACTTGGAAGACAGAAGCAGGTGGATCTCTATGAGTCTGAAGCCAGCCTGGTCTACAGTGTGAGTTCCAGAGGTACTCTGTCTCAAAAAAAACCCCAATAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTCCTTCTACTTGAATAGTGCTGTGGAATTTTAAAATTGCTATTACTTACACCATTCTGCTCCAAGGACTGTCAAGGTCTCTGTCTGCAAACTCCCCGCTGCTACTTCTCACATGTTCATCTGAAGCTTAGCCCAGCCCCAGATCCACACGGACCCCAGTCCCTTAGACAGATGGCGACCAAAGCCATAGGTGGATCTAACTTTGTCACAGGTATCCTGTGACGCAGACCAAGAGCAAGCCTGGCCAGTGGCGCATCTTAGACCTGAGAATGTGGAACAGGAGGGTGGAGAGGGCAGGCCTATGTGGAGAGTTGGTGACTGTCATTCCAG
Seq C2 exon
GAACACTGGGTCCATGCAGAAGACCTCAGCACCCTCAGGCCTATGCACCCCAACTCAGCCCAAGGAGTGGATGACATGATCCGCCTAGGGGACCTGAATGAGGCTGGTGTGGTGCACAACCTCCTGATCCGGTACCAGCAGCACAAGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-Myo7b:NM_032394:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(4.1=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTGTGGCTGGACCCTC
R:
ATAGATCTTGTGCTGCTGGTACC
Band lengths:
262-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: