BtaINT0098324 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4847272-4848488:-
Coord C1 exon
chr2:4848337-4848488
Coord A exon
chr2:4847473-4848336
Coord C2 exon
chr2:4847272-4847472
Length
864 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GACCCTTGTCTCTGTCCCAGGAT
3' ss Score
9.04
Exon sequences
Seq C1 exon
CTGAAGAGCAGAAGAGCCCAAGCGCTGTACCCAAAAGGAAGCGTAAGTCCATCTACGACACCATCACCGACACGGAGATGGTGGAGCAGGTGTTTGGCTTCCTGCCTTCCCTGACTGGTGGGCAGGATAGCCCGGCCACACCGGACATTGAG
Seq A exon
GTAAGTTGGGCCCTGCCAGCCCAGCATGGGATCTTGTGGGGTGCCTGCCCAGTCCCAGGCTTCAGCCAACCTCTAGGCTTTACTGAAAAGCCACGACTTGGCTCAAGGAGTGAGTTCTGTGGTTGTGGGTGAAGATGCAGAGAAAAGAGGAGCGAGGGTCTCTGTGGTCAGCCCCTTTCAAGTTAAGGAGGTGTCTTAGCTACAAGGCTTCCTAGAGCCTTTACTATGCAAATGTTCTTGGGCTTTCAACTGGGCAGTGTTTCCCACCTGTATTTGGCCGCTGTCACAGAGCATCTCATTGGCTGCTGCTCTGCAGAATGAGACCTGCGGGACTAGGGGTGGGGAGCAGAGCAGGAGGATTGGGCAGAGAGGGCAGCTCCAGGGCCGTCCTGTTGACTCTCACTGCATCCCTCAGGAGCTCATCATGCCTGCTCCTCCAAGCTCCACCCACCCACAAACCGTCTGTGCTGTGGGAGCAGCTGAGCATACTTCCCCTGGAGGGGCACCTAAGGGAGGCAGGCAGGAGGCAGCAGGGAGTGGGGGTGTCTGGGGAGCCGAGGTCTACAGGCAGAGGAGGCAGCAAGGAGTGGGGGTGTCTGGGGAGCTGAGGTCTACAGGCGGAGGGCTCTGAGGGCAAGCCGCCAGGTACCTGGGGCTCTCATATCAAGGCCCATCCAGCACCTGGCAGCCCACTAGGGACGCACTGAGGGTGTGGGCAGGGGGCGATCCCTAACACAAGGGGGAGTGGGTCATTCTGCACCCTGTCACAAACCAGGCAGGCCCTTCTTGGGGCTCCCTGGCCCCAGGATGTGCACACTGGCAGATCACATCTCAGACGAGAGTGGACCCTTGTCTCTGTCCCAG
Seq C2 exon
GATCTGAAGGAGATGACCCAGAAGCTGCCTGAGGTTGACCTAGACACGGTCCCCATGATGGAGGAGCCTGAGGATGACCTGGCTGAGTACACCTTTCCCAAGTTCGCTGTGACCTACTTCCAGAAATCAGCCAGCCACACACACATCCGGCGGCCCCTCCGATACCCTCTGCTCTACCACGAGGATGACACTGACTACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.686 A=NA C2=0.388
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCAGAAGAGCCCAAGC
R:
AGTCAGTGTCATCCTCGTGGT
Band lengths:
346-1210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]