MmuINT0104602 @ mm10
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31983529-31984022:-
Coord C1 exon
chr18:31983852-31984022
Coord A exon
chr18:31983739-31983851
Coord C2 exon
chr18:31983529-31983738
Length
113 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCCCTGTTTGGCCCTTTCAGGAT
3' ss Score
10.72
Exon sequences
Seq C1 exon
GGGCCTCAGGTCATTCTGGCTAAGGAACCAAAGGCTCAAGTTGCGGTCCATGAGAGGAAGCGTAAGTCCATCTATGACACTGTCACTGACACAGCGATGGTGGAGAAAGTGTTTGGCTTCCTCCCAGCCATGATTGGAGGTCAGGAGGGTCCAGCCCCAACACGCTTTGAG
Seq A exon
GTAAGACAGATCAAGCAGGGTTGGGAGGACCCTTCTTGGGCTAACTGGGACTATCAATGTGCATTCCACTGACTGAAAGGTTGGCCCATGTCCTCCCTGTTTGGCCCTTTCAG
Seq C2 exon
GATCTGGAAGTAAAGACCCAGAAACTTCATGAGGTTGATCTGGATACAGTGCCCATGATGGCGATGCCAGAAGAGGAGGTGGACAGCCTGGCTGAGTATACCTTCCCCAAGTTTGCTGTGACTTACTTCCAGAAGTCAGCCAGCCACACCCACATCCAGAAGCCCCTTCGATACCCACTCCTCTACCATGAAAATGACACTGACCACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388:ENSMUST00000134663:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCGGTCCATGAGAGGAAG
R:
CACAGCAAACTTGGGGAAGGT
Band lengths:
252-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types