DreINT0014995 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28085115-28088141:+
Coord C1 exon
chr6:28085115-28085324
Coord A exon
chr6:28085325-28087931
Coord C2 exon
chr6:28087932-28088141
Length
2607 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTTCTTATGTGTTCGTTTAGGAC
3' ss Score
9.45
Exon sequences
Seq C1 exon
GCTTTCCTCTCACTCCAGGAGCGCAGGGCTGAAGAACTTGCTGCTCTAGAGAGACAGCGGAGGCTTGAGGAAGTTCTGCGCCAGAAAAGAGAACGAGAGGCGGCTCAACAGTTAGAATCTATTACAGATCAGGAAATGGTGGATGATATCTTTGGCTTCTTACCTAGCATGGTTGGTGGACAGGAGGGCCAGGCCCCTGTGGGCTTTGAG
Seq A exon
GTGAGAGATCAAACTTCTTAAAGGCCGAAATTTTATTGCAGAGATGCCCAAATTAGCACCAGTGAGCCTATGATTTGGCCTGCTGTCCCATCTTAGACTGGTGAAGGAGAATGATGAAGAAGGTTGAGGCAAATACGTTCAACTGAGATCGTCAATCCTAATTTAACACAACCATTTGTTTGTTTGTTTAATTGTTGATCCACAAAGAAGCAAGCTAAAATGAAATGTTTCTATTAAATGTTATAAATTAATCAGATTATTTTTTTAAATGTAAATACTGTTACATGACAGATAAAAGACAATGCATTCACAATGTTTGTTTTTATTTTAAGAAGTTCATTATAAAATGTAATATCTACAGTTCATCTGGAAAGTATTCATAGCTCCAATTTGTTTATGTTACCACCGTATTCCAAAATGGATTAAATTAATTTATTTCCGCTAAAATACCCTATAATGACAATGATGTCAAAAAAGATTTTTTGAAATTGTTGCAAATATATTAAAAATGAAAAACCTGAAAAATCACATGTACATAAGTATTCACAGCATTTGCTGTGAAGCTCTAAATTAAGCTCAGCTACATTCTGTTTCCACTGATCATTCTTGAGATGTTTCAGCAGCTTTATAGAAGTTCACCTGTGGTAAATTCAGTTGATTGGACATTATTTGAAAAGGCATACACAGGATTGTCTCAAGGCACAAGGCTAGGGAGGTTTACAGAAAAGTTTCTACTGCTGTGAAAGTTCCAATGAGCACAGTGGCCTCCATCATCCATAAGTGGAAGATGTTTGGAACTACCAGGACTCTTCCTAGAGTCAGGCAGGTGATCAATAACCCGACGGTCAATCTGTCTGAGCTCCAGCATTCTTCTGTGGAGAGAGGAGAACCTTACAGAAGGACAACCATCTGTGCAGAAATCCCCTAATCAGGCCTGTATGGTAGAGTGGCCAGACGGAAGCCACTCCACACCTGAAATTTGCCAAAAGGCATCTGAAGAACTCTCAGACCATAAGAAACAAAATTCTCTGGTTTGATAAGACTAAAATTGAAGTCTTTGGTGTGAATGCCAGGTGCTACATTCGGAGAAATCCATGTACCGCTCATCACCAGGCTAATACCATCCATACAGTGAAGCATGGTGGTGGCAGCATCATGCTGTGGGGATGTTTTTCAGCAGCAGGAACTGGAAGACTAGTCAGGATATCGGGAAAGATGAATGCAGCAATCTACAGAGACATCCTGAATGAAATCTGCTTCAGAGTGCTCTTGACCTCAGACTGGGGCAACGGTTCATCTTCCAGCAGGACAATGACACAAAGCACACCGCCAAAATATCAATGAAGTAGCTTCACAACAACAGAGAATTCTTTCATGTCCCTCGCGACATAAGAGGTATTTGATTCGAGGAACTGCTGTAACGTTAAGTGTGTATTTTTCATGCAATGTTTGATACCGCACGGCGAATGAGAGAAAAAAAAACTCAGCATTTCCCGGAAACTTAGATGCACACGGCAGGTAGCGTCAGAAAGCCACAAAATTCGGTAAAAATCCTACACGAGGTTAAAGTTTGGTTGTAGTGCTAACATGTTTACACTCTGTGCAATAGTTTGTTCGATACGAACAAACTGAATAAACGAAGAGCACTGGTCGCTCACTTACCAAATCTGTGGAGACAGGACAATCAGCAGCAACTAGTCTTTATTAAGAGGAGAGTACAAGCGAATCCGGATCTCAGCGTTTGCAGATGAGAACAGCTCTCAGGTAAACAATAATCTTCCTTAGATATGCAAGTTATTGTTGTCGAGCGTCGCGTACACTGTTAATCCACACGTGAGTCTAAGCTCTCATAGAGAGAAAATGAAAACAAAACTTAACTGCAGCAAACTATAAAAGCAACACTTCACGCTTGTGTTCTCTGTCGTCTAAACACTGTGACAGTAATGAATATTAATGAAGTTGCACAATAGAGCGCGCTGCTTGGTTTGAACCAAGCCTTACTCATGCATTAATGCATCACACTGTAAGACGTAATAAGACACACTCTGGCACAGACGCCCAGTCTGCACGCTGGAATACAACGCTATTATGTCATGACCGTGACGCAGCTTCAAAAATTTGTTTCAAACCGGAAGCACGAATTTGCTTGACATAATGCAAAAACAACCAATTTACACTTATTAGTGAAATATAGGTGTCCTAATAGTGTTTTTAGCAGTGTGGGACACATATACGACTGTCAACAGCTCAAAAAATGTGTTTTGGTGTTTCGTGACCCTTTAAATCCTATTGAATGTCTTTGGAGAGATCTGAAAATGACTGTACATTGTCGCTTCCCTTCCAACCTGATAGAGCTTGAGAGGTACTGCAAGGCGGAATGGACAAAAATTTCCAAAGACAAGTGTGCCAAGCTTGTGGCATCCTATTCTAAAAGACAAAAAAAATGTGGAAAAAGTGAAGCGCTATAAATACTTTCCAGATGCAGTATATTTACTTTTAAAATTTTTAACAATAATAAAAAATAAATAATTAAAATCAATTCAAGTTTTGTGGTGACATTAAATCATAAAAAATACAATCCTGAAAACTTCTTATGTGTTCGTTTAG
Seq C2 exon
GACTTGGAGGGCAAGCGGACGGTGCTTGAGGAGGTGGATTTGGATGATGCTCCAATGATGCCCATTCCAGAGGAAGACTATGATGATTTGGATGAGTACTCCTTCTCCAAGTTTGCTTCCATGTATTTCCAGGGCGCTGCCACACCAACACACATTCGTCAGAGATTACGCCAACCTCTGCTCTACCATGAGGACGAAAATGATGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.257
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]