GgaINT0031411 @ galGal3
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2289442-2291165:+
Coord C1 exon
chr9:2289442-2289618
Coord A exon
chr9:2289619-2290955
Coord C2 exon
chr9:2290956-2291165
Length
1337 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
CTACCTCATGTTCTGCACAGGAT
3' ss Score
7.87
Exon sequences
Seq C1 exon
GAACACCTGGCTATTCTGGAAGAAGAAGAGGAAGAAGGACAAAGGATGAATAATGATTTTGTTGACAGACACACAAATTATGATGTTATCAGTGACCAGGAGATGGTGGACAAAATTTTTGGGTTTTTACCTTCTATGATTGGAGGCCAAGAAGGACAGGCTCCTCTGGGCTTTGAG
Seq A exon
GTACAGTGATCATGCTCATGTAAATCTAACATATCTGTTAGAATTCCATCAGAGGTCAATTCTGTTCACTGAACTGTACAGTGAAAGAAACACCCAAATTAGTCATTCAGACAGTCTCTTGGGGAACCTGCATTCAGAGGTCAGTTCCCAAAAGTTTTTGGTCACCTGCCATTGAGGGACTACATGCTGTCAAAAACTGCTTCAGGTTTATTTCTTTATCCCAGTAGACCCCCACCAAATAATGCCATTCTGTCCATTTTGGCACCAGCCACATGCCAGTGCTCTCAGTGATTTTCCAGCTGGCACAAGCTGGAAGTTCATGACCTAAGTTATCTCATGTTCTGAAAAGCAAAATTTGACTGACAGCTGTAGAGTAGGCTGGGCATCCACTATCTACTACTGTCCATCTGGACAGATGGAGTAGGGAGAGTAGGTAGAATAGAATGGTCTGGGTTAGTACAGGATATGAACAATAAGACAGTACCTGCGTTTTGCAACCAGCAACCAGCAGTGTTCGTGGTCAGCTGAAGACCAGGGCAGGAAAACAAACTCTGAGTCCCAGTAGTCTGTTGGTGGCGGCTGAAAATGGCTTTAGTGTTATCTGGAAAGTACATAAAGTATCAAATAAGAGAGAAAGAGATGCTTCTTACCATAAAATGACAATAGCTTAGGTTGGAAGGGACCTGAAAGATTATCTAGTTCCAAACCCCCTGCCATGGGGCTGGGGGCCCCATCCAACCTGACTGCTCAGGGCCCCATCCAACCTGGCCTTGAGCACCTCAGAGGATGAGACATTCACAGTTTCTCTAGACAGCCTGTGCTAGGGCCTCACCATCCTCTGAGTAAAAAATTTCCCTCTAACATCTCATCTAAATCTCTTTTAGTTTAAAATCATTCCCCTTGTCCTGTCACTATCTGTCCATGTAAAAAGTTGATCTTCCTCCCATTTATAAGATCCCCTTTAAGTGCTGGAAGGCTGCAATGAGGTCTCCCCAGAGCCTTCTCCAGGCTGAACAAGCCCACCTCTCTCATCCTATCTTCATAGGAGAGGTGCTCCACACATTTGATGATCTTTGTGGCCCTCCTCTGGACCCGCTTCAACAGCTCTGCATCCCTCCTGTCCTGGGGACCCTAGGCTTGGATGCAGTACTCCAGATGGGGCCTCATGAGGGCAGAGCAGAGGGGACAATCCCCTCCCTCTCCCTGCTGTCACCCCTCTGTTGGTGCAGCCCAGGGTACAGTTGGCCTTCCAGGCTTCAGGTGCACACTGCTGGCTCATGTCCAGCTTTTTGTCCACCAGAACCCCCAAGTCCTTTTCTACCTCATGTTCTGCACAG
Seq C2 exon
GATTTGGAAACAAAGCCCAGCAAGCTGGAAGAGGTGGACCTGGACATGATTCCTATGAGCGTGGAGCTAGAAGAGGAAGCAGATGGCTTGGAAGACTACACCTTCCCGAAGTTTGCAGCTACTTATTTCCAGGGGTCATCTACACATACACACATCCGGAAACCCCTGCGGCACCCATTACTCTACCATGACGACAAGGACAATGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTGGCTATTCTGGAAGA
R:
AGGGGTTTCCGGATGTGTGTA
Band lengths:
342-1679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]