RnoINT0097427 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24769644-24770137:-
Coord C1 exon
chr18:24769967-24770137
Coord A exon
chr18:24769854-24769966
Coord C2 exon
chr18:24769644-24769853
Length
113 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCCCTGTTTGGCCCTCCCAGGAT
3' ss Score
8.15
Exon sequences
Seq C1 exon
GGACCTCCAGTCATCCTGGCTAAGGAGCCAAAGGGCCAAGGTGTGGCCCTTGACAGGAAGCGTAAGTCCATCTATGACACCGTCACTGACACAGCAATGGTGGAGAAAGTGTTTGGCTTCCTCCCAGCTATGATTGGAGGTCAGGAGGGTCCAGCCCCAACACGCTTTGAG
Seq A exon
GTAAGACAACGCAAGGAGGGTTGGGAAGACCCTTCTTGGGTTAACTGGGACTAGTGATGTGCACTCCATTGACCAAAAGGTTGGCCCATGTCCTCCCTGTTTGGCCCTCCCAG
Seq C2 exon
GATTTGGAAGTAAAGACCCAGAAACTTCATGAGGTTGATCTGGACACAGTGCCCATGACGGAGATGCCAGGAGAGGATGTGGATGGTCTGGCTGAGTATACCTTCCCCAAGTTTGCTGTAACTTACTTCCAGAAATCAGCCAGTCACACCCACATCCAGAAGCCCCTTCGATACCCACTCCTCTACCATGAAAATGACACTGACCACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCACTGACACAGCAATGGT
R:
GTGGGTGTGACTGGCTGATTT
Band lengths:
244-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]