BtaINT0098336 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4829227-4830844:-
Coord C1 exon
chr2:4830718-4830844
Coord A exon
chr2:4829406-4830717
Coord C2 exon
chr2:4829227-4829405
Length
1312 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTGCCCTCTTTCCCCCTCAGGGA
3' ss Score
12.1
Exon sequences
Seq C1 exon
GCCCCCAACTGCCCAAGACTCAGCTGATCTTGGCTGTTAACTGGAAGGGGCTGTACTTCCTGGACCAGAAAGAGAAGGTGCTCCTAGAACTCTCTTTCATTGAGGTCATGAGTCTGATCACCAACAG
Seq A exon
GTGGGTGCTCCGAGGGAAGCCCCAAACCTGCTCCTTCCCACAACCTCAGTCCTTGGGGCTCCAGGAGAGACCAGGAGAGGGATGGGGCACACTGTTACTGGGGGCCCGACTGACTCACACTGCATCATATGTGTGGCATAATGGCCATTGGCTCAGGCCCTGCCCTCTACTGTCCTGGGGTCAGCAATGTGTCCACACACCACCGATTGCCCTCTCAAACTTCCTCTAGAGCCCAGCTCCCCTGGAAAGAGGCACATAAGCTTGCAGCCTTTGGAGTGTCCATTCACTTATAGGTTCCTTCTCTTCTCGCTGGTGGGTACTGTTCACATGGAGGTGCCAGCAGTCTGGGAGAGGGAGCAAGGGACAGGCCTGTGTGTGCAGAGCATGGAGCAGAGTGAGGACCACCTTGCATGCCAGGCGTGCCCCAGACACCCTGCCCCCGGCTCTCATCTACTGAGAAGGCCTCCACGCCCTTCTGGAAGGCCTGCCTGTGCCCTGCCAGAGCCCCTCCTTGGTTAAAACACACCCTAGTGTGGCATGACCATTAAGGTCATTCCCAGTGTGTGCAGGGCACATGCTGGTACCACTTACTGAGGCAGACTGTGCTAGGTGCTCTCTTCTATTCCAATAAGTCCCCCCATCACTCGATACTCTGCAGATGAATAAACAGGCATGAAGAGGGTAGGTGCTTAGTTGCTCAGTCGCGTTCTACTCTGCGATCCCATGGACTGTAGCCCGCCAGGCTCCTGTGTCCATAGGATTTCCCAGACAAGAATACTGGAGTGGGTGGCCATGCCCTCCTCTGGGGGATCTTCCCACCCCAGCAATCAAACCAGGGTCTCCTGCATTGCTGGCGGATTCTTTACCAGCTGAGCTACCAGGGAAGCCCACAGAGGCTGGGTAGCTCACCCAAACTCACCCAGGCTGGAGCTCCATCTCAGCACCAACTTTCTTTGCAGTGGCCCCATGGTGGCCCTGCACGCTGGCCACCACCTTGCCTGCCCAGAGCTGACTCCACAGACAGGCTTGGCACCACCACTGCCTTTGAAGCCCATAGAACAGGACCCTAAGCTCTGGCTCATCTGCCCACGCACACAGAGAGTCCGGGGCTAGGGCAGATCCATGCTCAGCCCCAGGCCCTGTATGGCTCCACACACACTGGAGTTTCCTCATCTGTAAGAGGGCTTCATGGTGTGATGGTTGGCACTCTGGACTCTGTAACTTGGGCAGGTCACCCCTCAGGCTGTTGAGGGGCTGACCCAGGGGGAGGGTGGGGCAGGCCTCTGGTCACATTGCCCTCTTTCCCCCTCAG
Seq C2 exon
GGAGGCCCGGGGTGGGCAGAGGCTGATGCTGTCCACGCTGCACGAAGAGGAGTATGAGTTCCGGTCCCCCAGCAGTGTGGCCGTCGCCGAGCTGGTGGCCATGTTTCTGGAGGGCTTGAAGGAGAGGTCCGTGTTCGCCATGGCCCTGCAGGACAGGAAGGCCACAGGTACCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.131
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146041=SH3_9=PU(4.0=3.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGCCCAAGACTCAGCTG
R:
GGTACCTGTGGCCTTCCTGTC
Band lengths:
294-1606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]