RnoINT0097438 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24756440-24758402:-
Coord C1 exon
chr18:24758276-24758402
Coord A exon
chr18:24756604-24758275
Coord C2 exon
chr18:24756440-24756603
Length
1672 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TGCTCCCTCTGTGCCCTCAGGGA
3' ss Score
10.89
Exon sequences
Seq C1 exon
GCCCCCGCCTTCCCAAGACGCAGCTGATTTTAGCCATTAACTGGAAGGGGATGTACTTCCTGGATCAGAAGGAGAGGACACTGCTGGGGTTGTCCTTCGCAGAGGTCATGGGTCTGATCGCCAACAG
Seq A exon
GTAAACCTTAAGTCTTTTACTTCTCAACATAAGCACTTGGTTTAGGTGTATATGGAACTCGAGGACAGATATGAAGAGGGGGTAACTTGTCCTCAGGGACAGGCTGCAGTAGCAGGACAAGTAGAGCAACCACAGGTGTGGGGAGAATCTTTGGCGTCCTTAAAAAAACAGAAATCGTGTAAGAATACGTTTGCATTTTAATCCCAAGTGTGGGTGGGACATGGGGCTGCTTCAGATGATCCACATCAGCTGACTATGATTTGCCTCATGCTCTAGCAGGGGCGAGATTTCGCCAGCTGTAGATAGTTTCTGCAATTGTGTGACATTTGGAATTCTGGGGCCTTTTCAGAGGGTATGTAAATGCTAGGTTCCCGAGAGGTGGTACGGGGCGCTGTTACTTGTGGTTGTAGTAGTCATGGTCAAGGAAGAAACTACAAGAGGAGGAAACTAGATATCCTGACAGAGGAGATAAAACTCGCACACTGAGGAACTCACACCTCTAACAACAGGAAGTGCTCTAATGATGATGTCACCAATTTCCCCTCTATCCTTTTTTCTTTCCTATCTAGCATTAGGGGCTGTAAGGATAGAGAAAGGGAAAGAGCATCTGGTGCCGTGTGGTTGGGGAGATCAGGGAGCTGCTCCTGGTGGCCAGCATGGCCTTCACTCTGGGTTGCCTTCCGGCCAGGCTCCTGCCTTCCCTGTTTTCACAGCTGATTTTAGCCATCAACCCGAAGGGACTGTACTTGCCGTTCGTGCACTCCTGAACTCGTAAAGTAGCATATCCAGGCTACACACAGGACGTAGGGACCCCTCCTCCTGCTTGCTAGGAGCTCTTCCAAGACCTCCGGGAACTCCTGCCTATGCTCTACAACAGTTCCTCAGTCTTGCCAGGTGTCTGACAAGTTTACAGTACCACTGCTCCCTGGGGTCAACTGTCCATTCTCCTGGACAACTCCAACTCCTCGCAGCACCACCTGCTGTATTAGTGAATTGTCTTCCTGCCACACAAAACTACCTGGAATAAGCAGCTTAAGGGAGGAAGGGTTCAGTCTGACTCACAGTTCGAGGGCACAGTCCATCACAGCAGGAAAGACAGGACAGCAGGAGCATGAAGCAGCTGCCCCCGTCATGTCCACAGCCGGGGAGCAGAGCTCAGCTCACTTTCCCCTTTCCATTCAGATCTGAGCCTCTGGAGTGCTGTACCCATTAATCCAGTCCAGAAACTCTATCAGGTGTACCCCGAGGTTCGTCACGTAGGTGGTCTAGAGGCTAACAAGGTGACAGTCAGTTTTAACCATTTCACCCATTCTGAAGAGAGGTAAATGGAGGCACATCAGCTAGGTAACTGTCCCAGGTTCCAGAGTAAGCCTAGAGCCTTCTGTGTGATGTTCCTCGTTATCTGCTCAGAGCAACCTTTCATGCTGGGACACTGGCCTATCCCACTGCCTCTGGGACCCAGAGATCCGCTGGTCACTTGTCCAGTGCCTAAGGTTCTGCCTGAGACTTGGGCCAACCTGCACTCAGAGTAACCTCTTCCAAGGACCCTGGAGGAGTTCCTTCTTCCCCCGGATGTGGCCCTGGAACTGTCACTTCTCAAGGGCTGCTCTGGAGCTGCAATGAGAGAGAGTTGGGAAGGCTCCAGGTCCCACTGCTCCCTCTGTGCCCTCAG
Seq C2 exon
GGACGCCCCAGGTGGGAAGAGTCTGCTTCTGTCCACACTGCATGAAGAGTACGAGTTCGCCTCCCCCAGCAGCGTGGCCATTGCAGAGATGGTGGCCTTGTTCCTGGCAGGCTTGAAGGAGAGATCTGTGTTCGCCATGGCCCTGCAGGACAGGAAGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146041=SH3_9=PU(14.3=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTCCCAAGACGCAG
R:
CTGTGGCCTTCCTGTCCTG
Band lengths:
286-1958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]