GgaINT0031422 @ galGal3
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2299181-2299976:+
Coord C1 exon
chr9:2299181-2299307
Coord A exon
chr9:2299308-2299806
Coord C2 exon
chr9:2299807-2299976
Length
499 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AACTACTTGTTAATACATAGGGC
3' ss Score
4.84
Exon sequences
Seq C1 exon
GTCCCAGCTTGCCCAAGAACCACTTTATACTTGCTGTAAATTGGAAGGGTATCTGCTTCTTGGATGAGTCAGAAAAGCGGCTCCTTGAGCTGACATTCCCAGAGATAACAGGCATCCATACAAACAG
Seq A exon
GTGAGTGTCCCAGAAAGACAAGATCTGAAGAAGGCAGCCCTGCTCATACTCAGAATGGGGTTCCATGTAAGAGGGTGGTATACTTTCTCTGCCATCCCCCTAAGTGATTTCATCTGTACCTGGAATGGTGGGTTAGCCTAGGTCTGGGAAACAAGAGGGACATGTTCCGAGCAGCCTAGGAAGGAAATGGTGAAACGGCTGAATCTTCCCAGTCAGTGGAGGGAAAGGTGACACTGCTCAGCTGGAATAGTGTAAGGAACTAAATGAGGTTTTATTATTGCTCAGTTGTTCCATAAGAAGGGCATTTTCTTGTCTAGAGTGAAGCATTTTTGTACAAAATATTGTGGAGCTCAGAGAACCTGAACCACTTTAGTCCTTTAGAGTCATAAACTGCTAATATAAATTAGGATCTATGAAGTTGTCTACCACCTTGGCTGTGATTGCAGATAGCTCTACATTTTTCAGATACTCTGGTAACAAACTACTTGTTAATACATAG
Seq C2 exon
GGCAGTGAAATCATTTGGACAGAGTTGCACTCTCATCACCCTTCGTGCCGAAGAATTTGTCCTGACATCTGTGAACAGCATTGTCATCGCTGAACTGGTGGTGATGTTCCTGGAGGGGCTAAAGAAGAGATCACGATTTGCTGTGGCAATGCATGAGAAAAAATTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=PU(4.5=3.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAGCTTGCCCAAGAAC
R:
TTTCTCATGCATTGCCACAGC
Band lengths:
287-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]