HsaINT0108974 @ hg38
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:127627184-127628535:+
Coord C1 exon
chr2:127627184-127627310
Coord A exon
chr2:127627311-127628371
Coord C2 exon
chr2:127628372-127628535
Length
1061 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
ACGCTGTCCTTCATCTCCAGGGA
3' ss Score
10.33
Exon sequences
Seq C1 exon
GCCCCCGCCTGCCCAAGACGCAGCTGATCTTGGCTGTTAACTGGAAGGGGCTTTGCTTCCTGGACCAGCAGGAGAAGATGCTGCTGGAACTCTCTTTCCCAGAGGTCATGGGTCTGGCCACCAACAG
Seq A exon
GTGCGGGCCCTGAGGGAAGATCTCTTCTTACACACTGAGTCCTTGTGATGCATCTGGGGGCTCGGGGAGAGATGGGGAGAGGGGCAGTGTGCCGTCCCGGGTAACAGGCCGGGGTGGAGGGACAAGAATCTACGTATGCGATGGCTTCTGTACTTCGGAGCCCCACCCTCCTGCACCAGGCCGTACTGCCCATGAAGTACTCCATTGGGGCATCACGCGTTGCACTGGCAGCTTCTCTTTGAAACCCAGGTCCACCCGGAAGGGGCAGGGAAGCGTGCAGCCTCTGGCGGGCACTTATTTAGAAGGCTCCTTTCTTTGTCATGGACGAGAACTGGTGGCCTGGAGGGTACAGGTTGTCTGGGAAGGCGACAAGGGACAGTGCCTGGTGTGTCCTGGGGCACAGGGCAGGGCTGGGGGTCCTCTTAGGCTGGGGCTGACCCCCACTCCCATGGGTCTCCATGGATCTCATTGACTGGGAACTTTTCCATGCCCTTTGGGAAGTCCCACCCAAGCCCTGCCAGAGCGCCCCTTGGTTGAAGCACACAACAGAGTGGCACATGCATCTCTGGGCTGTGCCAGGTGTACAGTGGCCACCACTCCCCACTGGCCACCTCTCACTGAGGCTGACCATGCTGGGCACTTTCCTGTATGCCACGAAGTACCGACAGCATCACCCATTCTGCAGATGAGCGGATGAGTAAACTGAAGCACGCCGAGGTTAGGTGGCTCAGAGTAAGCACATGGCAGAGCCGGCAGCTCATCTCAGCTCTGACCTTTGCAGTGTCCCTGCGGTGTCACTGCACACCAGCCACCTCATTATCTGCCCACAGCCAACCCCACACATGGGCTGCACCACTCTCAGCCTCCGAGAGGTCCTGTGCTCCGCCGTCCTTCATTTGTCCAGACCCACAGTGGTGTCTGGCCTAGTCCTGGCCCTGGCAGAGCAGCTCTGTGTCCTCATCTGTGACTCAGGACCCCCAACCCCACCTCCCGAGGCTGTTTAGGGGCTGGATCAGGGGAAGGTGGAGGGGGCTCCTGGTCACGCTGTCCTTCATCTCCAG
Seq C2 exon
GGAGGCCCAGGGCGGGCAGAGGCTGCTGCTCTCCACGATGCATGAGGAGTACGAGTTTGTGTCACCCAGCAGTGTGGCCATCGCTGAGCTGGTGGCCCTGTTCCTGGAGGGCCTGAAGGAGAGGTCCATTTTCGCCATGGCCCTGCAGGACAGGAAGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994:ENST00000409816:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146041=SH3_9=PU(14.3=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGACGCAGCTGATCTTGG
R:
CTGTGGCCTTCCTGTCCTG
Band lengths:
279-1340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development