DreINT0015007 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28102161-28102551:+
Coord C1 exon
chr6:28102161-28102287
Coord A exon
chr6:28102288-28102396
Coord C2 exon
chr6:28102397-28102551
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
ACCTCTCTTGATTCCACCAGAGA
3' ss Score
6.93
Exon sequences
Seq C1 exon
GTCCTCCTCTACCAAAGAGCAAGTTCATCCTTGCCATAAATTCAACTGGAATAACTTTCCTTGATGAACGAGAAAAGAATCTTCTAATTCTGTCCTACCCAGAGCTCACCGGGGTCAACACTATCAG
Seq A exon
GTCTGCTGGACAACACTTAATGTTTCATGGCCTTTATTCCTTTATAATTAATGTAAATAAGAGTGTTAGCTTCCAAAAAAAATAATTCTACCTCTCTTGATTCCACCAG
Seq C2 exon
AGAAAGGAAGTGTGTTTGTTTGCTGACTCTGAAAGGAGACTTCACACTGAATGCAATCATGGCTGTAGAAATCTCTGATCTGGTAGCCATGTTTCTGGCAGGCCTCATACAACGTTCACAATATGCAGTGGCCCTACAGGAGGTCAACAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(8.8=100)
A:
NA
C2:
PF0037313=FERM_M=FE(10.9=100),PF0765312=SH3_2=PU(18.0=20.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGAGCAAGTTCATCCT
R:
TCCTGTAGGGCCACTGCATAT
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]