BtaINT0098344 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4822960-4824136:-
Coord C1 exon
chr2:4824031-4824136
Coord A exon
chr2:4823074-4824030
Coord C2 exon
chr2:4822960-4823073
Length
957 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CGGGCTGCCTCTCTGCCCAGATG
3' ss Score
8.68
Exon sequences
Seq C1 exon
GACAGGGCCCCGGAAGCAGCCGCCGCACCAGGTGGAGGTGGAGGCCGCTGAGCAGAACGTCTCCCGCATCTGCCACAAGGTCTACTTGCCCAACGACACAAGTGAG
Seq A exon
GTGAGCCTCCCCGCCCCGCCCCCCACACCACCAGGGGCTCACAGCCAGAGCAAGGCACCTCCCCACTGGGGTCACTCTAGGAGGGCTGGGAGACGCCTACAGACACAGCTGTGTGAGTTCGAATGGACTGTCTCCCCTTGTGCGCTCCTAGCCCCTCTCCTGTGAAAATACTGCTCTGCTTTGCTGGCCCCCACCAGCATGAACTGAGTGCTGGGTGCCCTCAGGAGCTCCGCGCCATGCAGGGGACTACTGGCCCTGGGCAGGTTGTAGTATGGCGGGGAGTTGGGATGTCCCAAAGGCGTGGGGGGCCTTCCAGGCCAGGCACAGGAGTGAGGAGGCCAGGAGGCTGGGCAACGAGGCTGAGTTCCAGGGCCTAGAGGCCCCTTGGGGCTTCCACCCAGCCCTGGGGCCACAGTGAGCAGGGAGCCCATGAGGTGCCTATGGATGGAGCCCAGTTGGCTGTTGGGGACAGCGGAAGAGCCAGGTACGAGTTGGGAGTGCATGCGTGCGTGCTAAGTCACTCAGTTGTGTCTGACCCTGTGCGACCCCATGGACTGTAGCCCATCAGGCTCCTCTGTCCAAAGGATTCTCCAGGCAAGAGTGCTGGAGTGGGTTGCCATCCATTCCTCCAGTGGGAGACCTTGGCTAAATGGCAGCAGTGGAGGGAGGGGAAGTGGGGGTGATGACCTCACGGCCCTCCCCAAGTGGACTGTGGCCTAGAGATGGCAGAGCCCATGATGGGAAGTTCCCAGTCTGGCTGCAGGCTCTCAGAGCAAGTTGAAACAGCCAGGCCTCTTGGGTACCCCGAGACAGTGAGCCCTGTGACAGAATAGTGCACACATCTGGCCAGGTTTCTAGAGGGGTAGTCTCACCCTTCTCAGGACAGGGCACGCCCAGCCTTAGCCAGCAGGGTTCAGAGGGTTATCCAGAGCTGAGCCGGGCTGCCTCTCTGCCCAG
Seq C2 exon
ATGCTGGAGGTGGGTGCCAACACGCGGGTGCGGGACGCCTGTGACAGCATCGCCGCCCGGCTGCAGCTTGCCTCCTGGGAGGGCTGCAGCCTTTTCATCAAGATCGCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGTGGAGGTGGAGG
R:
TCTGCGATCTTGATGAAAAGGCT
Band lengths:
190-1147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]