GgaINT0031429 @ galGal3
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2307620-2307956:+
Coord C1 exon
chr9:2307620-2307725
Coord A exon
chr9:2307726-2307842
Coord C2 exon
chr9:2307843-2307956
Length
117 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AAAGTCTTGTTGTCTTATAGACA
3' ss Score
6.92
Exon sequences
Seq C1 exon
GAGTGGCTCCAGGAAGTGGGCACCTCATCCTGTGGAGGTTGAGGCCATCTTGCAGAACAACACTAAGATCGCACATAAGATTTGCTTCCCCAATGAAACAGAGCAG
Seq A exon
GTGAGAACTTACTTGTTTTTTCAGGCAACATGTATTCTTGCAGGAGCATATTTGAAGATATTCAGTGCTCTCACTTATTCCTCTCCTCTGTGTAAGAAAAGTCTTGTTGTCTTATAG
Seq C2 exon
ACATTTGATGTGGGAACAAACACCAAAAACCGGACTCTATGTCAGAACATCGCTTCCAAACTGCAGCTGAGCTCTTGGGAAGGTTTCAGCCTCTTTGTCAAGATTGCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
A:
NA
C2:
PF093795=FERM_N=FE(39.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCTCATCCTGTGGAGG
R:
CTTGTCTGCAATCTTGACAAAGAGG
Band lengths:
202-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]