RnoINT0097445 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24750008-24751636:-
Coord C1 exon
chr18:24751531-24751636
Coord A exon
chr18:24750122-24751530
Coord C2 exon
chr18:24750008-24750121
Length
1409 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGTGCTACCTCTCTGCACAGACC
3' ss Score
9.3
Exon sequences
Seq C1 exon
GGTGGGACCTCGGAAGCAGCCCCCACACCATGTAGAGGTGAAGGCCGCTGAGCAGAATGTCTCCAAACTACACCATGAGGTCTACCTCCCCAATGACACCAATAAG
Seq A exon
GTAAGTGCTCCCCACGGTGAGTGTCAGGCCTCAGCAGGGTGCAGGGCACGTTCTTACCATCCCAGCATGCTCCTCACTCACTGCACTAGATCTGCAGTGCAATGGACCCATTGCCAGGGCTCCCGTCCGTGCCAGGGCTCCCGTCCGTGCCATGGCATGTTTGCTCCATACTCCAAGCCAGCGTCAGGGAGCACTGCCCTGAGTTAAGGGGCCCCAGCCTATTTCAAAGGCATGAGTTAAGATTCCAGGCGGAGGAGGGGAAAGAGAAGAAGGCAGAGGGTGGGCAGCAAGGCTGAGTCCTAGGGCTTATGGACCCCTGGAGACATCCAGGGTGAGCAGCAGCCACGGCTCTTTGGCCCAGGGCTTGCCCTGGAGGCTCGGGGAGGCAGAAGGGACAGGTAGGAGGTAGGAGAACATTGGGTCCCAGCTGTGATAAAGAAGCTTCAAAGGAAAATGAAGGACCAAGGTCACCCTCTCACCCTCCCCCCCGGGTTCCTTGAGCATCTGCTGCTTGAGTATAGCTGAGTACCAGCAACGAACTTCCCATCGTCTGGCTACAGCGTCACAATACAAGTCCAAAAGGTCCAGACTTCCTGGGTGTAGTCTGGGCCCAGGACAGTAAGTGCTGTTGTCAAGGAATTTATATGTGGATGACTTTCTAGGGCCTGTCCTTCTCCAGACAGAACACAGCCAGCCCAAGGCTTATAGTGACAGAAATAGGTCCAGGGTGATGGTTCTGTCCATCATGTGCTGGCCACATAAACACAAGAACCTGGCCCTCATGCAAATGCTGGGTACAAAAGCTCATGGGAGGCAGCGACTCTCTGAAGCTTATTGGTCAGTCATCCTAGTCAAATGGATGAGTTCCACATTCAGTGAGAGACCCTGTCGAAAAGTAGTGTCGAGAGCAATTTAGGAAGACACAAGTGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGAATCTGAGTTCTAAGCTAGCCCAGTCTACAGAGTGAGATCTAGGATAGCCAAGGCTACACAGAGTAATTCTAACTCAAGAAAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGTGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGAAAGAGGGAGGGAGGAAGGTAGAGAGAGAGGGAGGGATGGAGGGAAGGAGGGGGAGAGAGAGAGAGAGACAGACAGACAGACAGACAGACAGACAGACAGACAGATACTTGAGGTTCACCCCTGGCCTTCATACGCATGTGAACACAAATACGCATGCACCCACATGTGCAAAACTTCACATGAACACGAATATAGCATGTGCACCCTTTGGATATACCTCAGAATAGTGGCTTGGGAAACCCTCTCACCCAAGCTGGGTCCTGGGCCTCATGTGCTACCTCTCTGCACAG
Seq C2 exon
ACCTTGGAGGTGAGCAGCAGTAGCCGGGTGCGAGACCTATGTGAGGGCATCGCCACTAGGCTCCAGCTGGCCTCCTGGGATGGCTGCAGCCTCTTCATCAAGATCACAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
A:
NA
C2:
PF093795=FERM_N=FE(39.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGACCTCGGAAGCAG
R:
TGTGATCTTGATGAAGAGGCTGC
Band lengths:
214-1623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]