DreINT0015015 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28113047-28115869:+
Coord C1 exon
chr6:28113047-28113152
Coord A exon
chr6:28113153-28115755
Coord C2 exon
chr6:28115756-28115869
Length
2603 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
CTACTTACCCTTCTGGACAGATA
3' ss Score
7.13
Exon sequences
Seq C1 exon
AATGGATCCCAGAAAACTTCCACCTCACCAGGTTGAGGTTGATGCTATTCAGCAGAACAGCACCCAGATCTTCCACAAAATTTACTTCCCAAATGACTCCCAAGAG
Seq A exon
GTAAAACCACACTTGCACACTAATTACCAGCATTATCAGTGGCCTCAATACAATATGTAACCCAGCCTTGCACCCCAACATCTAATAATAAAAGAAATGCAAAGGTCACAGGCCTACTCTGAATTATAAATTTGTAACCTTTAGTATAGGGGCCAGCTCTAACTATTAAGAAGTGCTTATTAGCATACCTATTATTTACCTGTTAGCTGTTTACTAGTTCTTTTAAAGTACATATTTCACATGTTCATATTATACTTATCTAATTGCACACAATACCTTAAATTGACTACAACCTTACTAACTATAATAATTAGTGAAATAAGAGTTTGAGTCAAAAAAATAAAAAAAGCAATAATTAAACAAATAAAATAATAATTATAATATATGTGTGTATCTTTGTGCATATGCCCAACATTTGGATTAGATCCATCCTCACCTTTCATTAAAGTTGTTCTAAAGAATTAAATAACATTCATTCTTGTCTTAGGACAATTTTAATTTTGAAAAAAAGAATTCAAATTTATTATAAATAATTTTTTATGATTCTCTTGATTTTTCCTTCTTTGTTAAAATGTAATTTAACATTTTCCCCTAACTATACATTTGGGTGTACTAATATTTGCACTGGGATCTTATAATAATAATAATAATAATAATGATAATAATAATAGGGCGAGGCAGTGGCACAGTAGGTAGTGCTGTCACCTCACAGCAAGAAGGTCGCTGGTTCAAACCTCGGCTTAGTTGGCGTTTCTGTGTGGAGTTTGGATGTTCTCCCTGCCTTCACGTGGGTTTCCTCCGGGTGCTCCGGTTTGCCCCACAGTCCAAAGACATGCGGTACAGGTGAATTGGGTAGGCTAAATTGTCCGTAGTGTGTGTTTGAATGTGTGTGTGGATGTTTCTCAAAGATGGGTTGCGGCTGGAAGGGCATCCGCTGCGTAAAAACTTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCGGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATAATAATAATAATAATAATCACATTAACAATTACATTTATATAACTCTTTTCTCGACACTAAAAGCCCTTACACATTTTTGGGGTGAATCTCCTCATCCACCAACAATGTGCAGCATACACTTGGATGATGCAACAGCAGCCATATTATGCCAGACTGCACACCACTCACCAGCTAATTGGTGGAGAGGAGGCAGTGTGATTAAGCCAATTATGATATGGGGATGGTTAGAAGGCCATGATGGACAGATGCAGAGGTTAAATCCCTACTCTTTTTTTTTTGGACATCCTGGGATTTTTAATGACGAAATAGAGTCAGGATCTTGGTTTGTCATCTCATCCAAAAGACGGAGCTCACTGAGCAGTAGAGTCCCCATCAATATACTGGGGCGTTAGGACCCACACAGACCGCAGGTTGAGCTACCACTTCTGGTCTCACTAACATAATTTCTGGCTGCAACCTAGCTTTCCCATGTGGTCACCCATCCAGATACTGACCAGGTGCAGCCCTGCTTAGCTTCAGTGGGCAATTCAGTGTCCTCACCATTACATTTTACATTTATCATACTAAGTGTTTGGTAAAACTGTTATTGAAAACAAATTTATCTAATTAAAATGATATTGCAGCAAGCTAGAAATGATCACCTTTAAAGTAACTCCAAAAGTTTAGAAACCATTTTTTGCTGTAAAGCCAATATTCTCTCAGAATGACAGGTTTATTGATTATTTGCAGCGTTCAGCTCATTAATACTTTCAAAACTGTCACAAGTAATCTTCTGTGTAAGCCATATAAACACAACTACATTGGTGTTATTTGTGGAATAGTGGGAAAATATATTTTACAAATCATAAAAAGTGGATGTGTAAAACTTGTTCAGTCGCAACACGGCACTGAGCCAAAATGGAAAGTGATCATTCTGTCAGGTGGTCTAGGGCTTTGTCTCATAAGCTTTATCACCTACGTAGTCTTAACTGTTAAATTACTCTTAAGATTTCATGTGTGAACAATGGCTTTGCAAAACAAATAATCTGGTAAAAGAGCAAGATTACTGGTATAAGCAAGCACGAGGGCAGAACATGCATGAGGTAAGAAGTCTGCTTTGGACCATTCATGAAGTTCTGCTGTGTTCAGGGCTGTGTAAGGGCTGCTGATTTTTTTATAACTAACATCCTGCTCATTTTAGTTTCAAGCAGCTCCCAAAGATTCTGTTTTCTTTTCCATTGAGCACTGCTGCAGCTCCGCAGTTTCTATTCCATACTATATATAGCCTGTATTAACTGCAGTATTTATAGTAACTGAAATGTGTCAATAATATGCCACCAGTATTTTGGTACTGATGTGTGAATATTACCAGGAGAGCCAGTCTTGTCATTTTACAGTAATTACCAGGATTTCATTTTGATCGTTTTTGCCCAATGGCCATGTTTTAGATTTTTGTTTTTCAGCTTGGCGCTAGTGCTTTTTATCTACTCTCTAGTGTTCAAAATGCTGAAAATAATAGCAGTTGGATTTGATACCATTGTAACTCTTTGTTTATTCTAAACTTTGCTTTTTTTACTACTTACCCTTCTGGACAG
Seq C2 exon
ATATTTGAGGTGGCAACCAATACTAAGATCAGAGACCTGGTCCGGACCATTGCTAATAAACTCATGCTGTCCACAGCTGAAGGTTTCAGCCTCTTCATGAAAACTCCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(0.2=2.8),PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.4=22.2)
A:
NA
C2:
PF093795=FERM_N=FE(38.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]