BtaINT0100644 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44547311-44550664:+
Coord C1 exon
chr2:44547311-44547375
Coord A exon
chr2:44547376-44550622
Coord C2 exon
chr2:44550623-44550664
Length
3247 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CCTTTGTTCTCTATTTCTAGTAT
3' ss Score
9.06
Exon sequences
Seq C1 exon
TTTGTAGGTGCCACTACTACTCTGGGAAAATGGCAGATGACGAAGAATATGAGGAGGTGGTGGAG
Seq A exon
GTAAGATTTTTAAAACTTCTGAGTCTGACAAGTGTATTTATGTGGCGATAGTCAAAGCCGTGTGGGTGAATTAATTGTTTGAAAACTACATTGTCTATTATAACTTCACAAAGAGTCATCGTTAAAGCATAAGAAAAGGAGTATTTTTACGTTCCGTTTCACTATAATTATGTGGGATTAGAACTGAAAAGAAGTATCACTGTTACCCATCTTTGCTTTTCTTTAAATTCACCAAAAAAAAAAAAGTATGGGGTAAAGTATGGATTTTCAACTGTCTGCTGAAACTACCTTCTTCCCCACTTCCCAGCCCCTGTAGCCAAAGGAACAGAGGAAACGAAGAGAAAGTTCTGAGAACTGAATCCTATTTCTTAATGTTTGCACAGCCACAGAGGGAAAAAGAGCTACTTACTCCTTGTTTCAGCAAGCTAATTATCTGTTTAGGGTGAAATGGATTAAGCGTTCAGAGAAATATATATATGTGAGATATATGTATATGTAAGAGTTTATACATGTGTATATGTGCACACACACAAACAGGTAGAAATCATGGGGCTCACAAGTGACAGTTGGAGCCATACTTCCCCACAAACTCCATCCTATTTACCCAAGGGAACAAGACTAGCTTTTGCATTTGAATTTTGAAAAAGAACAAAAGACCATAGTGGGCATCTTGAAAAATTCCTTCAAGGTTATTGAGATATCTGACATGATTTATAAAGTTGTTGCTTTATATTTATTTTATTTTAGTTTTTATTATATTGTGGTTTTTCTTTACCACTTCTTGCCTTTACCATCCATGTAAATATATTGCCAATGAAATCTGTAAGTCCTTAACAATTACCAATTAACAATGATGATTTAAACATGTGAAAATATCTCTTAAGTGCTCGAGATACATAGAAGCAGTTTTGAAATCTGTGCTTTTTAGTAAGAGTGAAATTTAAGTTACCCAGAATCAAATTCCAAATGAACATGCCAAAATCTATCTTTAGAATATTATTTTATTTGACAGTTTATACTTAGATCAAGAAAATTGCTTTTATTATTGAAGGATATGAAGGGAAAAACAGACTGACCTTCATTCAATGTAACATTCAACCTCTCTGGTTCAAATGCCAAAAGCCAGATTCTTCAGTGTGCAATATTTTCACTTGGGCACATTTTACATACATCCCTGCTGGTCAGAATAATCATTGTCAAGCACTTACACAATTATAAATTGCCTTCTGTATGATGGTAATACCAGGAATACCTTTTAGCCTCCATCTTAAATATGCCTTGTCTTCCTTAAAATAATGGTGTTAACTGATCATTGGAAATTGCCCTTAGAACTAGATTTGAAGGATTTAACCAGATGTCATAAAAATGGAGGAGGCTATTTTTAGGCATCTTTTCCTTGCCATATTGTTCCCTGTTTCTGGGACCAGCAGGTGATAAACTAATAGACTTTCTGCCAGAGAGAATTGAACCAAGGTCTCTCTGACCTCAAAAGATGCCATGAGAATGGATTGGTGGCAGATTTAAGGCAATAGGTAGGGAGGAATTCACAAAACTAGAACTAGCTATAAAGATATTTCTCCTGGGGTTCTTGGACAACTGAATAAAGTTGTACTGTCATTCTCTAGTCAAATTTAAACTTAGTACATCTTTGCCTTTTCCTTTCTTTCATCATACTATCTATTTAGTGGCACACATCTAAAAAAAAAAAGTGAGATTTGGCTTACAAGTTAATGCCAACCATTTGGATAATGTTGCCTTTTTTTGTAAGCTTTTTTCTGACATATTTACTAATGATGAGAGCTTAGCAAAGGTAAAATTGGAAGGCTACCAAAGAGCTGCTTTTACTTGGATGCTAAGAAAATCCAAAATAGTTGTAAATCATTCACTTTAGTTGAAAACTTTTCAAGTCACTGCTGTTTTGTGTGGCCAGAAAAAAATGGTTCCATGTAGATCAGCATCAAATAGCATTCCCTAAAGTGTCCAAATGGTATTTCCCATGTGATGAAGACATAGCACATAAAAGAGATTCTCTGTCCTGTAAGAGCTCGTGATTTCTGTTGCTATGTGTAAGGACACAGAGACAAAATTGGATTTCAAAAAAAAAAAAAAATAGTACAGGAGCAGAGGAAGCATAAGAGTGGGAGACATTAAGCAACTTTTATGCTAATTTTATTGCAAGTGAAACAGAGCATGTGGCCTATGGACCATAATTCAGTAATCTGATGAGAGATCATTTAACCAAGGGCAAAAGAAAGGAGGCCCCTGAGGGAAATTTTGCCTTCAATGTTTTTTTTTTCCCTCCATCCCAAGTATATGTTTTGGTGGTCAAGAAAAAATGAAGCATAAAATGTTACTCGTTTTGTTAACTGAGAAAATGAGCCAAGTGGTTTCATTTTATCCCTTTTCTGTATGCCTTGGCCTAAACCATTCTTTCCTTCTGTTCATCCAGCAAAGCTGGGTGATGCTAAGGGCAGGATTCCACTCTCCTTACGCATCTGAAACAAAATGTCAGCCAGTTCTTATCCACATCTATTTATTGCTAGTGATGTCAGAAGTAGTACAAAAGTAGATTTGATTTCAGATCCAGCCTGCAGGCACCTCAGAACTATCAGTGGCAAACTGCTGCCTAACTTCCCCACATTTTGTGATGAGGAATCTCATTGTAGCACCCCTTTCAGGACCTTCATGTTACCAGAAGGGACCTATTCGTAACTCCAGAAGAAACTCTTACTACTTAGTCATCAGGTGATATAGGGATAATTAAGATGTGTATATGCTTTCAGATCTATCATTTTCATGAGAATGATATTTTAAAATTTTATTTACACTGAGGTTTCTGAGGTTTTTTTTTGTCAGCAAACAGTGAGTTTTTTTTATCACAGTTCCTCTCTGCCCAGTGCACACACTCAAGATATTGTTATTATATTCTCAGCAAACTCTGAGAGTACCATAAGAAAACATTTTATTTCTCAAGCAAAATAGCTTCACCAGATAAATAGCCATCCTCAGATACCTTTCTCATCACCCTGCATCTCCTTGTCCAATCTGATGGCTTTCACTGTGGCTACTCTGATGTTTCACATAGTTGAAATGGGTCCCAAAATATGAACAGCCCCCGCCATCTACTTCCTTCCCACCAATGTTGAAAACCAACTGGACTAATGAAATAAACTAAGTGGTTTAACTGAGGCAAAGCAGAGGTGATTCCTGCTTTGGTTCTAATGATACCTTTGTTCTCTATTTCTAG
Seq C2 exon
TATTACACAGAGGAGACAGTCTATGAAGAGGTGCCAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907:ENSBTAT00000055345:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]