HsaINT0112167 @ hg19
Intron Retention
Gene
ENSG00000183091 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:7720]
Coordinates
chr2:152586129-152589699:-
Coord C1 exon
chr2:152589635-152589699
Coord A exon
chr2:152586171-152589634
Coord C2 exon
chr2:152586129-152586170
Length
3464 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CCTTTGTGCTCTATTTACAGTAC
3' ss Score
8.51
Exon sequences
Seq C1 exon
TTTGTAGGTGCCACTACTACTCTGGAAAAATGGCAGATGACGAAGACTATGAGGAGGTGGTGGAG
Seq A exon
GTAAGATTTAAAAAAAAAACACTGACAGCAAACTATTTTATGTAGTGACAATCAAAGCTGTGTAGGTGAATTAATCATTCGAAAAATACATTGTCTATTATAACTTCACAAAGAGTCATCATTTAAAGCATAAGAAAGGAATATTTTATGTTCAGTTTCACTATAATTATGTGGGATTTAGAATTGACAGGAAATATCACTGTTTCCCACTTTTGCTTTTCTTTAAGCTCTCAAAAAACCAAGTTGGAGTAAAGGCAGGTTTTAATTCGTCTTCTAAAACTGCTTTCTTCCCCACTTCCCAACCCCGATGTTCAAAGGGACAGAGACGAAGAGAAAGTTCTGAAAATGGAACTCTGTCTCTTAGTATCTGTATAGCAATAGAAGAAAAGATCTACTCCTTATTCTTTGCTTCAACTAGCTAATCATCTATAGGGTAACATGGGTTAGATATTCAGAATAATCATATGTATGAAATTATATGCAGATGTGAGACTTTATACATAATACATACACATGTGCACAGACACACACATACAAGCAAATATAAATAAAGGCATGAAGGTCACAGCGATTGTTGGAGCCACACCTTCCTACCAACTTCATTATATTTACCCAAGTCAACAAGACTAGCTTTTGCTTTTGAATTTTGAATAAGAACAAAGACTATAGTGGGTATCTTGAAAATTTTCCTTCCAATTATTAGTGGACATCTAACACATTTTACAAAGCTGTTAATCATTTATTTTATATTTATTTTACATCCTTTTGTTTTTATCATCTTACGGTTTTTCCTCACCGGCTCTTGCCTTTAGCTTCACATTCTAGAAATAAAATCTAAAGGCTTGGAACTATAATGCACATAAATACAGTGCCATGAATCTGAATGTGCTTAATAATTACCAATTAATGATGATGATCTAAACACATGAAAATCTCCAAATGCCTAAGGCACTTGGAGGCAGTTTTGAAAATCTGTGCTTTTTAATAAGACTGAAATTAACTGTAAGAGCTACCCAGAACCAAATTTTAGGTGGCAGTGCCAAAATTTCTCTTTGGAAAATTATTTTAGTGACCAGTCTATATTTAGATGAAGAAAATTTTATTTATTCTACAAATAAAATAGCTTTTATTACTGAAGGATATGAGGGAAAAAATAGAATGAATCTCGTACAATGTAACACTCAGCCTCTCTGGCTTAAATGCTGATACCACATCTTTCATGCTGATATTATCACTAGTGTGCATTTTACTTATGTACCTAAGGGTCAGAAATATCACTGTCAAACACTAATACAATTATAAATTAAATTGTCTTCCCTATGATAATAATGCCAGTAACAGTTTTTACTCTCCAACTTAAATATCCCTTGTCTTTCTTAAAATAATTGTGTACCTTTGCCACTGGAAATTGTCCTTAGTGCTAGACTTGATTGATTCAACTAGATGTCATAAAAAAGGAGGTGGCTATTTTTAGACATCCCATCCCTACCATTTTGTTCCCATTACAGCATCTGTGTCTGACCAGCAGGTGATAAACGAATAGACTGCCTGCCAGAAAGTATTGAACTGAGATCTCTTTGACCTCAAAAAAGATCATGAGCATAAGAGGGTGGTGCATTCGAAAAAATGGCCAGGGAAGATTTTAGAAAACAGAGAGGAACTAGCTTTAAAAATATGCAGAAAACAGAGAAGAACTGGCTTTAAAAATATATCTCCTTGGGATCTTGGACATCTGAAATAAAGTTTTACTGTTCTCTCTACTCTAACTTAAACTTGAAAAGAAAGAGAGAGAAGCAAGGATGCACTATCTAATTAGTGGCACAGCTCTAAAAAAAGAGTGAGATTTGGCATACAAGTTAATGCCAACCATTTAAATAATGTTGCCTCTTTTATAAGCGTATTTCTAAGATGGATTTACCAATGGTGAGAGCCCAGCAAAGGTAAAATTGAATGGTTTCCAAGGAGCTGCTTTTAAACTTGGATGCTGAGAAAATCCAAAATAGTTGTGAATCTTCCATTTTATTTTAATATTTCTTCTGAAGCCACTGATGTTTTGTGTGACTGGAGGAATGACTCTATGTGGCGTCAGCATCAAACAATATTTTCTAGTGTCCAAATGATATTTCTCATGTGCTGAAAAGTCACAACTGTAAAAAAGCAAATCTCTGTCCTGTCAGTGCTTGTGATTTTTGTTGCTATGTGTAACGACATACAGGCAGAATTAGATTTTAAATTAAAACAATAGCTCAAGAGTAAAGAAAGCACAAGAATGAGGAACATTAGGCAAGTTCTAGACGATTGTTAACGCAGGTGAAATAGCACAGGCGGCCTACTGACAATGGTTAAGTAATTTGATGACACTTCACTGAAAAGAATGCAGGCCATTGAGGGAAATTTTGCATCTTAATGTTTTCCCTTCCCTTGAGTGCTGTATGTTTTGGTGTTAAAGATAAGAAAAAGGAAGCATAAAGTGTTTTACATCCTTTTTTTTTTTTTTTTTTTTTCACTAAGAAATGAGCCAAGTGTTTCATCTTTATCCCTTTCCTCATGTGCTTGGCCTAAACGAGCCTCTCCTTCTGTTCACCCTACAGAGCAGGGTGAGGCTAAGGACAGGATTCCTCTCTCCTTACACATCTGAAACCAAGTGTCAACCAGTTCCTTTCTGCATCTATTTATTGCTGGTGATGTCAGAAGTAGAACAAAAGTAGACTTGGTTTCAGATCCAGGCTGCAGATCCATCATGCAGGCCATGATGACCTCAGAGCCACTATGGCAAATTGCAGCCTACCTTTCCCACACTTTGTGATGAAGAATCTTCTCATTTTCCCCTTCATTACTTGGCATTTACCAGTTTTCATATTAGCACCACTCTGTTTAGGACAATCACACTATTGAAAGGGACTCACCCATCACTCCAGAAGAAACTTATTACTTACTAATCAGGAGGGTATAGGAATAATTGAGATGTGGATATACCTTGGGATCTTATTATTTCCATGATGCAATCCATTTAAAAATGTATTCACACTCGAGTTTCTGTTTTAGTTTATTGTTAGTTTGCAAACAGTGAGTTTTATCACAGTTCCTCTCTGCCCAACCCACACACTCAGGATCTTCTTATTGTATTCTCTTCTCAGCAAATTCTATCTTGGGGACCATAAGAAAAAAATTTCCATGTCCCAGTAAAGTAAAATAGCTTCTCTTGATTAAAAAACAGCCTCATACATTTTTCTCAGCCCTCTGCATCTCTTTGTCCATTTGGATGGCATTCACTTTAGCTTTCCTGAAGTATTACAAAGTGAAGATGGGTTCCAAAATATGAACAGGCTCCCTCACCTACCCCTTTCCCACAGACATTCCAAATCAACCGAGCTAGTGCAGTCACCTAAGTGGTTCAGCTGAGGCAGAGGAGAGGTGGTTTCTGCTTTGGTTCTCTTGCCAATGCCTTTGTGCTCTATTTACAG
Seq C2 exon
TACTACACAGAAGAAGTGGTTTACGAAGAGGTGCCGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183091-NEB:NM_001164508:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)