MmuINT0107242 @ mm10
Intron Retention
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52330809-52334510:-
Coord C1 exon
chr2:52334446-52334510
Coord A exon
chr2:52330851-52334445
Coord C2 exon
chr2:52330809-52330850
Length
3595 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CTCTTGTGCTCTGTTTACAGTAC
3' ss Score
8.47
Exon sequences
Seq C1 exon
TTTGTAGGTGCCACTACTACTCTGGAAAAATGGCGGATGAGGAAGAGTATGAGGAGGTGATAGAG
Seq A exon
GTAAGAAGAGAGCCCCTCCGGCAGCAAAACACTCTGTGTATTGACAGCTGAAGCCAGGGGGTGAATCAGTCATTTGAAAAAACACATCATCTATTATAACATCCCAAAGAGTCACCAACAAAGTACAAAGAAGGCATGTTTCATGTTCCGTTTCACCTGGAAGTGAAAGGGGGCATCACTACTTCCCAGTTTTACTTTTTCTTAACTGCTCCAAAAACAAACAACACAACAAACAAAAGCCGGGCTGTAGGTGCAGATAGGTTTTACTTTACCTTTTAAAAGGATTGCTTTCCCACATCCCAGCCCCAGCGATCAAAGGGCCCTAGGCACGTTTCCCAGCACCTGCACCAAGAGAGAAGGAATCTGCTTCAATTAGCTGAATTGCATAGGGGAGGTGTTACACACAGGAGGAGCCATCTATGAGCCGCTTGTGTGTGTGTACACGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTCCCATGATTTCACTGATACACATGTGAGCCCATGAAGGTCAGAGAGACAGCTGGAGCCACTTTCCCACCAACTCCATCATACTTAAGTAAACAAGATGAGCTTTTGAATCTTGACTGAGAACTAAGACTACAGCAGCTATCTTGAAAACGTCCTCCCAAGTCATTGGTGGCCTCCTGGACGTTTTGCAGAATTAATGTGTACTTCCTGTTAGTGTCACATTGTTGTAATCTCAGTGTTTCCTTTCCTTAGCAGCTCTTGCCTTTATCTTCTAGAACAGAAACCCAAAGGCTTGAGGCTAATCTGTGTTAATATATTGCTATGAAATTGAAAGTGCCTAAAAAGTTCCAATTAACAATGATCTAAACAGATGAAAATCTGTTGATTTTTTTTTTTTTTTAATGATTGAAATTAACTAGAAGAGCTGTCCCAAACAAAACTCTGGATAAAGGTGCTAGAATTTATACTTGCTAATCAATCTCTATTTAGGCAAAGAAAATTTTTTATTCTATAAATAAAATTACCGTTATTACTGAAGTATATAAAAACCAAGCTGTATCTGACAGAGGTAGTGAGTACCTCTCTACTCCTATGTCGGTGGCTGCAGCTTCTCATGAATTGCACCATCACTAATGAGCATATTAAAGTAAGTTTGGAGAAGTCAGAACTATCCCTATTAAATAAGCACACTATAAATTAGTAATCATGAATAATTTCTTTCCTGTTATGATAATCAGAGGAACATTTTCAAGTCTCCAGTCAGACTACCTTAGCCTTTAAGTGTTTGTGTAAAGTGTTTAAGGGCATTGTGTTAGCCTTGATTGAGCCAGCTCGTCACGACAGTGGAAGGGGCTATTTTAGGCATTCCAACCTCGCTCTCTTGTTCCCATTCCTGCTTGTGGTCTGACTAGCACATACTAACTAATAGATCGCCTGTCAGGGAGTGTTGAACTCTAGTCTCTTTGGTCTCAGAAAAGATCACAAGCATTGGGTGGTTGCAGATCCAAGAGGATTGGCTCAAAAAGAGTAGCCAGTCTCAAATCCATGGCTCTTGGATATCTGAAATAAAATATTGCTGGCACTGTCTATATGGACTGAAATGAAGAAGGAGAAAGGAGCAGTAACGCACTGCCTGATTAGCAGAATAACTCTAAAAGCATGAGGTTTGGCATTCAAGTTCATACCAAGCACTTGGATGATGTTGTAGTTTTTGTGAGCTTACTTCCAAGACAGATTTCCCCATTGTGAGATCCCAGAAAAGGTGAAACCACATTGCTCACAAAAGCTGCTTTTACTGGGATGTTAAGAAAATCTAAAATCGATGGGAATCATCCATTGTAGTTAAATATTTCTTTGCAGGCTACTCAGGCTCTGTGTGACCAATGGAATAGCTCCATTTGACCTCAGTGCTAAACAGTAGTACTACTTAAAGTGGCTAAATGGCCTTTGTCCTGCGCTGAAGTCACAGGGGTAAAGAGCTCTCCTCTGTCCTGAGAGCACATGGCGCCTATTACTATATATAAAGATGCGTGCACACAAAAATTAAATTTTAAATGGAAAATAAGTACAAATGTAAGGAACATTAAGTGAGCTTTATATAGTTAATGACCACGGTGAATAGCTCAGCAGGCCTGGGGCAAGGAGAGCTTACTGAACCAAGGGCAGGAGAAAGTAGGGCGCTGAGGAGAATTTTGCTTCAGTGTCTCTGCCCCACCAGCCCCCGTCTCAAAAGCTTCCCTGACAGAAATAAAAGAACATCAGCATAAAATTCCATCCTTGTTTTTTTTTTTTTTTTTTTTTTTGGATTGAGAAAATGAGCCAAGTACTTCCTTTCCATCCCTTGGTTGAGTTCGTTGACCCACAGAAGCCATGCCTGCCGTTTGCCCAGCAGCACTGGATGAAGCTGGGGCAGGATTCCACTCTCCTTAGGCACCAGAGACAAAATGTCAGCCAGTTCCTCTCTGCATCTATTTATTCCTCATGATGTCAGAGAACAAACCTGGAGTGGGTTTCAGATCCAGGCTGCAGGCCCAGTGGCAAACTGCAGCCTCACTTTCCACAGTCCCATGAGGTGCCTTTCCCTCCCCTTTCTTCCTATGACCTACACCAACTGAACCTCAGCAACTCCCCTTTCCCCACAGATATTCTACCCCAGTTAAGCTAGTGAAGTCACCTGCTGCTTCAGCGGAGGCAAGTGCTGAGTGGGATGTAGGCTATACTGTATTGAAAAAGAGGCAGCCATCACTCCAGAAGACACTCGTAGTAATCCAGGGGAGATGGGAACAACAGATGTGAATATTAGTAGACATTTGCTCACAGTAGGTTTGTGTTTTGTTTTATAATCGGTATCGGTGAGTCCTGTAGTAGCTTCCCTTTGTATGCCCACCACACCCTGAGTCCTCTCCCAAGCAGATTCTCTTAGATATGGTGCTGGTTAGTTTTTGTCCACCTGAGAAGAGGGAACCTCAGCTGAGGAATTGCCTCTATCAGATTGGTCAGTACGCAAGCCTGTGGGGCATTTTTGATTAATGATTGCCGTGGAAGGACCTAGCCCACTGTGGACAGGGCCATTCCTGGGCAGGTGGTCCTCACTTGTAAAAGCAAGCAGTCTGGGGGGCATCAGTGAGAGCAACCAATAAGCAGTGTTGTTCTTCCATGGCTCCTGCCTCTGCTCCGGATTGAGTTCCTGCCCCGACTTCCCTGGATGGAACTGTCATGTGACGTGTAAGCCAAGTAAATCCTTTCTGTCCTAAATTGCTTTTAGTGGTGGCGTTTTCTCACGGCAACAGGAAGCAGACTGGGACAGAAATTCTAAGGGGCAAGTGTTTCTTGCCCCAGGAAAATAGCTTCCAGTGACTAAGAGGCACCTCAGACCCCTCATCTTGCTGGACGGTGTGCAACTTCTTGCTAGATCTGATGTGTGCATTTTTAGCTTTACTCAAACTTCCTAAGTGAAAATAGATCCCAGAATAGGAACAGGACGTTACCTCCTTCCTCCCTGCAGATATTCCACATCCAGTCAGCCAGGGAGCAACCTCACAGGTTCAGTGGCAGCAGGGGAGGGCTGGCTGCTGGCTGTTCTACTTGTCTCATAGACACTCTTGTGCTCTGTTTACAG
Seq C2 exon
TACTACACAGAGGAGACAGTTTACGAAGAGGTGCCAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950:ENSMUST00000075301:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.643
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types