BtaINT0102031 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15416858-15418568:+
Coord C1 exon
chr22:15416858-15416959
Coord A exon
chr22:15416960-15418480
Coord C2 exon
chr22:15418481-15418568
Length
1521 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGTTTTGTCTTGTTATACAGGAG
3' ss Score
8.6
Exon sequences
Seq C1 exon
GTCCTACACTTACGATAGCTACTATAGCAGAAGTCGGAGCCGAAGTAGAAGCCAGAGAAGTGACAGTTATCACCGAGGCAGAAGCTACAATAGGCGATCCAG
Seq A exon
GTGGGTCTCTGTTCTCTCAAGCACTGTAAGTTATTGCGGGCACTTGGGGTATGGGGCGATAGACTGCTATAGCAGAGAAAGCATCATCTTCTAAGGACAGAAATTCTTCTTTCTCTTCTTGAATTTCTTCAGTCCAGAGGCAGTTACTGAAAGTGGGCTTTGTATTAAGAGTTGCTGGGTAGTGTTTATTGGTTGTGTTTAAACATTAAACATTTAAACATGTTTAAATCTAAAGTGCATTCTTAAATATTCACATATCCTTGGACAAAGATTTCTTTTGGAAGGAATAGAGAGAGAAGACCACTCAAACTGTGGCCCATTCTTTACGGTTACTTGCTAGAAATAACAGCCAATTTGTCAGTGTTTTAAATTTTAAAAAGGTAGTATTTTTTTTGTAATATGTAATAAAATGTCATAGTCACTTGCTTCAGTAGCAGGATTTGTGGCTTATATGGTTAAAAATGTCTTTTATGTGTTAATATATATTCATAGATATGTTTTATATAACATATAGTTATTGCAGAAGTCTTTTTGGTTACTTTTTGTGTATCTCTTTCCTGGTGGCTTCTGGTCTTGCCCTCCCTCACCACCACTGCTCTGCCCCCGTGCCTTGCGGTTACAGTCAGTGGTGCTTATAGAATTTCAGTGTGATACAGACACTCCCTTATTTGAAACTCTTCAAGTACACCCCAGTGACCTTAGGGGCAGGTCCACCATGCTCCTGAGTATTGCATGGAGGCCTCTCCACCTACCAACTCCAGCTTGGGCTTTTCTGTGTTCCCTGCACTAACATTCTGGAACCTTTATTTTCTGCCTAGAGATTCACATGCCCATTTCACCATCTCCCATCACGCCTCTTGAAATAACCCACTCACTGCCCCTGGGAAGCCCTTCCTGACTGCTCATCCTGAGATATATTCCCTGCTGTGTGTTTTATTTATCTTACTACCCTCTATTCCAGACTACCCTTGAGCCCAGGGAACACTAGTCCGCTGTGTGTGTGCCCTTAGCATCTAGCAAAGTGACTGGCTCTTTGTGGATATTTTTCCCAAAATAACTGAACGGTGACCATTACCAAAGTCTTCTTCACTCACTGTCCCAGTGGTCCCATCCCTGCCCCACCTCACCCCTCATTGGGCTCACATTTTGATTTGATTTTGATTTCCTTGTCTTAATGAATTCTTGTTGGCCTTTTTTCCCCTTCTTCAGTCTAATTAAATATTGATGTTCATTTTGGGTAACATGGAAAATTATTCTCATTTCCTTGAGTGGATTTCAAGTAATTCCACAGGAAGTGCTATTTCTTTATTTACGCCTTGATATTACCACCATCTGTCACTAACATCTTTGAAAAGTCTACAGTGTTGTCATGGTCAGTACTGTACTTTTCTACCCACTATGCTGTGCCTCCTCGAGTCACTTGCTTTCAAGCCCCTTATATCAAAAAAGAAGTTTCAACAAGAATTCAAAAGGGTTGAGAGTTAAAAGATATTTGTATATTTGTTTTGTCTTGTTATACAG
Seq C2 exon
GAGTTGTAGATCTTATGGCTCTGACAGTGAAAGTGACCGAAGTTACTCTCATCACCGAAGTCCCAGTGAAAGCAGCAGATATAGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795:ENSBTAT00000030863:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTACACTTACGATAGCTACTAT
R:
TCAACTATATCTGCTGCTTTCACTGG
Band lengths:
190-1711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]