RnoINT0101354 @ rn6
Intron Retention
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130391658-130393178:+
Coord C1 exon
chr8:130391658-130391759
Coord A exon
chr8:130391760-130392892
Coord C2 exon
chr8:130392893-130393178
Length
1133 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGTTTTGTTCTTTTATGCAGGAG
3' ss Score
9.45
Exon sequences
Seq C1 exon
ATCCTACACCTACGACAGCTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
Seq A exon
GTGGGTCCCTGGGTTATGCACTGGGAGTGAGTGGGCCATCAGTGGAGTGCCTCCCCTTTGGTGCCATTGGCCTACAAACAAACAGCTTTTAAACATGGCCTTGGCACTGGGAGTTGGCAGGTGAGTCGCTGATCATTGTTTTAGAGTTGACACTAAAATGGGTTTTCAAATAGTCACATAGCTCTGAGTAAACATTTCTTTTGGAAGGAGAGGAGTAAGACGAAGACTAAATCATAGTTCACTTCTGGAAGTCAGGCTAATTTTCTGAAACAGCCAGTCTGTCATTTTATTAAGTCATGATTGTCTCAGCAGCAGTCATATAAGACACAGGGTTGAATCTTATATCTTGTCATTTATTTAATAAGATGTAACCTGATTGTGAGTCTTGTATTATCCCTTGCTGATGACTGTTGTCACCCTTATTCATTGCAAGCCCAAAAATCTTTCTATAGGCAGTACACATAGATACCCCCTTGTATCCACGGCTGCCAGCTAGACATGCCGTGCATGAACCCTCTAATGTTCTAGAGCTTTCCTTGTGCCCAGAAACAAAAGAGCCATCTCCATTGCTTGTCTTTGTGTTTTGAAGTGATCACTAAACTCCCACCCCCAACCCCCACTTCTCAGTTCTTCACTGCAGCCCATTGCCCTGGGAACACCCCACACCCATCCACTGACCCTTGGACCCTGGGGGTTTTCTGTGAAGGAGCTTGCCTGTCCACTGTCTCAAGCTGCCCTTGAGCCCTTGTACTTGGTCTACTCGTTGTAGTGGGATGATGCTTACTATAACATGTGGACTAGATCTCAGAAGAGATTTTTAGATGGGCTGAATGACCACCATAACCAAGCCCACACCCACTTTAGTGAGACTCCCTCTGTACCTTTAACCTCTTCCTGCTCCAGTCTCGTCTAGTATCGACATTCACTGGGTATAGTAGAAGAATAGTTTGCTCATTCTTATGAATGGATTTTAAGTAAGTTTCCCACTCTTGTGAGGTTTCTTTGTTATCTTAACCTTGGTTTTTGCTACCATTTACCATTTAAAGCATCCTTGAAAGACCTATAGTGTTGCCATAGGTTAAAACCAAAACTGGGAGTTGATGGCTGTTTTGTTGTTTTGTTCTTTTATGCAG
Seq C2 exon
GAGTATTAGGTCCTATGGCTCGGACAGTGAAAGTGACAGAAGTTACTCTCGTCACCGGAGCCCCAGTGAGAGCAGCAGATACAGCTGAGGTGTCTCTGTACAGGTTGTGTCTTAACTGTAAATACCTGGTAACTTAAAGTGTACGAAACTGGACGGCAATCTGTTGTGTGTTAGTCTTAGACCTCAATCCAGTAGTGGGTATTTCTTGTCACTTGCTTACATGTGTGCAGAAGAATTTAAAGTGCAGATGTCCCTAGAAATATTTTTATGCCCCATTTTACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128:ENSRNOT00000071152:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTACAGCCGGAGTCGTAGC
R:
TTTCTAGGGACATCTGCACTTT
Band lengths:
343-1476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]