GgaINT0091038 @ galGal4
Intron Retention
Gene
ENSGALG00000005282 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr2:1963774-1965795:+
Coord C1 exon
chr2:1963774-1963866
Coord A exon
chr2:1963867-1965390
Coord C2 exon
chr2:1965391-1965795
Length
1524 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TTTTAATCTTTTATTTGTAGATC
3' ss Score
8.83
Exon sequences
Seq C1 exon
TAGGTCATACACCTATGATAGTTACTATAGCAGAAGTCGAAGTAGAAGGAGTGACAGCTATCGAAGATCTAGAAGTTATGACAGAAGATCCAG
Seq A exon
GTACATTATTTACTTGCATAGCTTTAACCCTGTATTTATGCAAAAAAAAAAAAATTAAAAAATCACAAAGTATGTAGTTAAGTTCATGAAAACTAATGTTTTTTTCCCGAACATAAAAACACATTGCATAAGTGGCCATGTATGGTCAAAATAAGCATATAATTTTTCTTTATAGTTCTTCCCTTAAGTGTTTTGTTTAAATTCTGCAGTGAATTTGCTCTCAGGATTTAAACTGGGTGCCCTGTCATGGATTAAAAGCTACCTCGTATGCAAAGAATTCCATTGGATGGTGAATGCTTTTTGGCTAGACTGTGAAAGTGGATTAAAAAAAAGTGTGCAAAGGAAATGGAAGAATTAGTGCTATCCAGAATTAATCTTCAACTTCCTAGAACATGTTTTGAAAGAATGTTTCACCAGCAAACCCAGCATGCTTTTTGTGTCAGCGTTTGCACCATTATAAGTTTAGGATAAATTATCCTACTCAGACAAGGGGAATTAGCACAGGTGTAAGTGAGCACATTTCACCAAGATCAGAAGTGGAAAGTGTGCTTGATATAGAGAATAGAGTTCAGCAGTGATTAATTCCATACCTTTTTAATATTTCCCTTACTAGTCAACAGTAAGTCAGGCAGATCTCTGGCTACTGTAAATTTTCATTTTCTGTTCTCATACTCATATTTTTTTTTTCCTATGACTTTGTATTAACTCTTAATGGACTTTGCTATCATCCATTTTGCCATCTAGTTCTGATAGTAAGATGGCTTTCATCATGAATTTGAAGGAAAATTAATGACATTAACGAGTGTGAAAGTAACCTTTCAAAATTATTGTTTTAGGATGTCTGGAAACTTCAGAGAAACAATACTTGGTTAGGATATGCCTGCCCTGCCCTCACAAAGCTTTCCTTGCAGGCATGAGGCTAGAAAATTTGTGAGGAACGTTTTATTCTGTATAATTTGAACACTGTATAAATTGAGCACGTCCTGTGGCTTACCTGAAACAATCAGTGTGTTTGGCCAGGTGCTGAACTTGGAACTCTTGGTTTGGATAAGCTAGGACATTGTAATCTACTTCTCTTCTGCAGATGCACACACAATCCTGTTGTTACTGTGGGGCCTAATTTTTCAGGCCGTTCTCCAGACTTCAAATTGCAGTACATAAACCGAGGGGGCACAAAATCATCTTGGTTGAGAAATAACACTATATTTGTTAGAATATACTGCTTAGTTAGCTATTAATGCTAACAAAAACCTAATTGCTTTGGGGTGATTTTTCAGCTGTACTGAAGAAAGGAAGAAAAGTTATGGTTACAAACAGTTTGACTTGACTTTCACTGGGTTTTCATCATGTGAAGTTAATGACTATTTTAATTGAATGTCCCATAATGTATATTTCAGTTGTTATATAAGACTTAATGTATATTTTCTGGTCTTGTGCATCTCTTGCCAATCTTTGTAATGCGATGCAATTTTGAGTTATAACTTCAGAATGCAATTTTGAGGCATTTTAATCTTTTATTTGTAG
Seq C2 exon
ATCTTATGGCTCTGATAGCGAAAGCGATCGCAGTTACTCCAACAACCGAAGTCCCAGTGAGAGCAGCAGATACAGCTGAAAATGCTTCTTTGGCGATGGAAACCATATTAAATAAGTTTATCAGTGTTGCATTTAGAAAGAAAAACAAAAACTGTTCTGATGATGTCACAAGTGAAGTTGGAGAGTGTTTCCTGAGCTAACTGAAACTTTACCATTTAGCAGTGAACTCACTTGACTGTATCCATGAGGAGAGACGTACTGAAGCTCAGCTCAGTTGTTTTATGTCAAACGCTACTTTTACGAAACAGAAAAAAGTTTGATTTCCTTGAATTGGATTTTCCAAGCCATGAAAGACACGAGTGAGTTTGCTGGCACTGCTTTCTTGGTGCAGCAGTCATTACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282:ENSGALT00000015998:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAAGTCGAAGTAGAAGGAGT
R:
AAACAACTGAGCTGAGCTTCA
Band lengths:
345-1869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]