MmuINT0108806 @ mm9
Intron Retention
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121662109-121665959:+
Coord C1 exon
chr9:121662109-121662210
Coord A exon
chr9:121662211-121663362
Coord C2 exon
chr9:121663363-121665959
Length
1152 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGTTTTGTTCTCTTATACAGGAG
3' ss Score
10.33
Exon sequences
Seq C1 exon
ATCCTACACCTACGATAGCTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
Seq A exon
GTGGGTCCCTGGGTTAGAGCACTGGGAGAGACTAGGCACTTGGTGTGAGTGGGCCATCAGAGGAACACCTCCCCTGGAGTTTGATTGGCCTACAGACAGCTATTAAACGTGGCCTTGGTACTGAGAGTTGGCAGGTGAAGGTTGTCAGTTACTGTTTTATAGTTGACACTAAAATGAGTTTTATTCATGTAGCTTTAATTAAACATTTCTTTTGGAAGAGGAGTAAGGAGAAGACCAAATCACGGCTCACATCTGCAAATCAGGCCAGTCTGCTGTTTTATTAAACTGTGATTGTCTCGGCCACAGGGTTGAGTCCTATATCTTGTTATTTAATGAGTAAGATGTAACCTTATCATAACTCTTGAATTGTCCTTTGCTGATGGATGCTGTCACCTTTCCTTATCCATTGCAAGTCCAGAAAACTTGGTACAGACCGTGCACATGGGTACCCCTTGACTGAACTGTTTCGGGGTGGCCAGCTGGGCATGCCAGTGCATGAGCCCCTCCACCTGCTAGCTCCAGCTTCAGCTCTCTCTGACTTCTCTCCTCCAGTGTTCTAGAGCTTCCCTTCTGCTCAGAAATCCAAGTGACAGCTCTGTCACTAGTCTTTGTGTCCTGAAGTGATCAGTCACCTCCCACCCCTCAGCCCCCACGTCTCATATTCTTCACTGCAGCCCATTGCCCAGGGAATACCCCATCTCCATCACACTAACCCTAGAACCCTGGGGGTTTCAGTGAACAAACTTGCCTGTCCACTGTCTGGAGCTGCCCTTGAGCCCTTGTTCTAGGTGTACTTGTGGTGGGATGGACGACACTTACCATGACAAGTTGCCTCGCTCTCAGAAAAGCTTTTTAAATGAGCTTAAAGACCACCATAACCAAGCCTACACCCACTTTAGTGAGACTCTGTCCCTTTAACCCCTTCCTGCTTCAGTCTAGTCTAGCATTGACATTTACTGGATATAGTAGAAAAATAGTTTGCTCATTTTTATGAATGGATTTCAAGTAAATTTCCCACTCTTAAAAGGTTTCTTTATTGCTATCTTAACCTTGATTTTACTACCATTTAAAACATCCTCGAAAAACCCATAGTGTTGCAATAGTTAGAACAGAAAATGGGAGTTGATGGCGTTGTTTTGTTCTCTTATACAG
Seq C2 exon
GAGTGGTAGATCCTATGGCTCAGACAGTGAAAGTGACAGAAGTTACTCTCATCACCGGAGTCCCAGCGAGAGCAGCAGATACAGCTGAGATGTCTCTGTACAGATTGTGTCTTAAGTGTAAATACCTGGTAACTTAAAGCTTAAGAAACTGGATGGCAGTCTGTTGTGTTTTAGTATTAGACCTCAATCCTATAGTGGATATTTCTTGTCACTTATTTACATGTGCGCAAAAGAATTTAAAGTGCAGATGTCCCTAGAAATATTTCTATGACCCATTTTACAGTAGGCAACTATGGAATTTTCATTTTCTTGAATCAAGAAATGGTAAATTTGATGTAAGTATAATTTGCAGTGTCACTGTAGATAGGGTTTTCTGTAGATCACATTGTCTGTAGAATTCAGGTTTCTTTTTGTTTCAGGTTTTAGCATCCATGCTGCCAAACACAATTATGGAGAGCTGTCACAAGACACGTGTTCTCCATGTCCCCATGTCCCCATGCTGGTTGTCGTCTTGGTGTGTGCTGTCAGATGAGGCTGTCCACATCCATATTGACCATGGCCAGGTGTGCAGGGTGGTAGCTCATTCCTCTGTGTCCCAGCTGTGAGCACCCACACTTCACAGGGAATGCCAGCCCAGCCACCCCAGCTCCTGCTTTGGTGCTTGGTGCCTTTGGTTCCTCGTATACCCTATGTCATATTGTCACATACTGCATTTCCTGATGCCAGAAAATGAATTGTGATTTTTTTTTTTTAAATTCACTGGCACCAAAAATAATTTCTTCTGAGCTGGGTTCACTGTGAGTGTAGGGGCTTCTTCCAAACACAGATATGTGGTGGAGGTCCCTTGGAACAGAACCTGTATGGCTGGTCATCTTGTTCTGCACATGTGTGCTAAAGTGCCAGCTGAAGAATGTCCTTCAGAAGCAGCTCCACAGACACTCCAGCCAAGCTTCACTCTCACTGTGGCAATAGTAGCAGCCCTGCCCCAACCATCCTATTCCCTGTTTGTGTCGAGACACCCCCCACCCCCACCCCCACGCTGCCCCCTGACTCCATGAAGCCCTGCCTGATGGAGGAAACCCAGGACAAAAGTTGGGGGCAGCAGGGTCACAGGCTCTGCTGCACAGAAAGGGGTTCTTACGGCTTTGTGTGGCTCCTCCAGGAAGAATCTAACCTGTAAAAACTAGTGTGGGTTTGTTTCTTTGTTTTGTTTTACTCTTTAGTTTGCATTCTTTCCCCAAGTGTACTTAATCACCTTAGTGCCGGTTAAATCCAGTTCACAGACTTCCTGTCAGGTATATGGTGTAGAAGTCTGTACTCTCCTATCCCACCCAGGCCTTGCTAGTGCATTTGGGAAGAGTAAAGGCCTTGGGCTGGAGGAAATTACTAAAGCCCTGGCCAGATGGAGGGGAAGTACTGGATATATGAAAGTAGTCTTCCAGGGCCATGTGGCTCAGTGATATATAGCATGTGCTTAGCATGTAAGTAGCTCTGGGATCAGAGGTCAGCACCCCACAAATAAATAATGGTGTTACTCTGTGATGTATGTAAGCAGCATTTTGGTGGCCAGCCAGCTATTGTTCACCATGTCTGTAAATTAGTTAATTAGAAGGATAACATCGGAACTCAGTGCTTGGCGGGTTAGACATGTGGTTTATAGTGAGTGGGTCCTTCTACCCCCCCCCCCTTTAAAGTTGCCTACAAAGAAGGGTGTTTGAATCTAGTATTCAGTAGGAAGAATGCATTCAGAGCCCAAATAAACTGGCAAATGTAATTAGTAAGAAAAGGTCACTATTGGGCCATATATTCTTATTTGGTTGCTGTGTAACAAGTTATCCCAAATTTCTCAGCCTAAGAGTGCCTATGTGTCATTGACAAACAGGCAATGGTAGGGTTGACTCATCTGCTCAGGGTCTCAAGGTAAGGTCTGGAAGAGCTCATTTCTCAGAAGACTCTGGGAAGACGTGACTTGTAGCTGGGCCCCTCTAGAGCCCTCGGTGGATGCCCACATCGCCTGCTGTAGGCCTTGCCAGCTTCAACCAGCAGGGACCCTTTGAGTCTTGTCTTTTTTTCAAAACCTCTGCCCTCCTCCTGCTTTAAGGGTCCATGTAAGTAGATCAGACTCCAGAGATAAATCTCTACTCGAAGTCCCGTGGCCAGAGGAATTACAGACATTGTCGGGTTCTGGGGATTAGCATAGCAAGAGGAAGGGCATCCACCTACCACCTACTGCTGCATGGACAGGGCTTAACCTGTACCAGCAGGCACTCATGTTCAGTAATGTCAACCTTGCTGTTTATACTCGACTGAATACAGAAATGGCTTTTCTTCTTATCCACGATCATTCTGTATTTTGAAGTTATTTTTTTAATAAAATTGAATTATGTTGTGTAATGTGCTTAATAGAAAATGCTTTCTTTATTGGATGATTTTGTAACATCCTGTTTACTGCAAGTGGCATAGTTGATATTGTTCAAAAATGTAGAAAATACTTTTGTACATACTAGCAATGTCTAATTTGTATATACTTCTATGAAATTTCTCTACAACTTGAAAAGGATCTTGTAGAAATGAAAATACATGCTGAGTTTGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-Nktr:NM_010918:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTACAGCCGGAGTCGTAGC
R:
TTTCTAGGGACATCTGCACTTT
Band lengths:
343-1495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: