DreINT0104755 @ danRer10
Intron Retention
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20499239-20499993:-
Coord C1 exon
chr24:20499901-20499993
Coord A exon
chr24:20499816-20499900
Coord C2 exon
chr24:20499239-20499815
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTGTCTTTCTTTATGTTCAGGTC
3' ss Score
10.65
Exon sequences
Seq C1 exon
GTCAGACTCTTACGATAGTTATTCTAGCCACAGCCGCAGTCGTAGCAGAAGAAGAGGGCATCGGAGAAGCAAAAGCTCTGATCGCAGGTCCAG
Seq A exon
GTAAATCATCAGTTCATGCTTCTGTCCTTACTGAATTGTATGGATATAATAATATGTTTAATGCGTTGTCTTTCTTTATGTTCAG
Seq C2 exon
GTCATATCGCTCCTACAGTCGCAGTTCCTCTAGGCGGCGAAGTCATAGTCGAAGCAGTCGATACAGCTGAGTTTAAGGCATAATGATTGGATCAATAGTTTAATTTTTGTATGGTAATTTACATACTTTCTTGTACACTGACATTATGCTGTATTTTTTTTTTTTACATTTTATGAATGAATGTACATTTGAAAAAAACTTAGTCACCACTTTTTATTCTGACACTTTTTCTGTATTCCTAGCAAAGGGAGCATAGAAACCATCCAACTGTATAGCCAAGGTTATATATAAACAGCTACTTACCTCTTACTTATCTTTGAAACATGAGAGTTTGTAAAATGTATTTCATGTTTGGAAGGATTGTAACACGCAGCTCTGTTGGTTAACATCAATGGAAAAAGTTTTGATTGGACTAAATGAATGTTTTATGTTTAATAGATTGACTTGTTTTTTTATTATTTTTATTTGTACATAAAATACTCTGAATGTATCTAATGCTGCTTATTGATATACTGTTGAATTATAACAGACACACCTTGCCAACTGTAAATAAAACAATATTTGTTTGTGAAATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097:ENSDART00000127923:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAAGCTCTGATCGCAGG
R:
ACAGCATAATGTCAGTGTACAAGA
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]