BtaINT0103643 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34381740-34382630:-
Coord C1 exon
chr26:34382433-34382630
Coord A exon
chr26:34381845-34382432
Coord C2 exon
chr26:34381740-34381844
Length
588 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GCTTGGTCTTCCTCTTGCAGCTG
3' ss Score
10.86
Exon sequences
Seq C1 exon
GTTGAATACAAGAAAGGCTTTGAAAAGAGTAAGACCCACTTTCACCTGCCCATGGACATGGTCAACATCAGGCATGCTAAGAAGGCCCAAGCTCTGGCCAGTGACCTGGACTACAGGAAAAGACTGCACGAATACACTGTGCTGCCCGAAGATATGAAGACTCTCTGGGCCAAGAAAGCCTACGGGCTCCAGAGCGAG
Seq A exon
GTGAGCTTTGACTCCTTGCCTGCTCTCCCCATGCAGCTCTTGCAGCTGATATGGTGACATCTTCAGAGTGATTTAGAACTTGTCCATGAGTCTGTTAGGTGACTCAGGACCAGGAAGAACTGCTGGAGGTGTGCCAGGCCCAGGGGGGATGGATGGGGAGGTAGAGATGGAGATGGAGTTAGAATCAAGACAGTGAAGACCAGAGGGTGGAGGGTTGGGACTCAGAGCTATTGTGAAAGTCAAGGTGTGTTGGTAATGGGATGAGCAAAGAGGAAAGCAAGTGCGAAAGTGGTAAAGCTGATAAACGTTGTAAAGTACATCTAGGAAGTATAGCAGGTTGGCAGATAAAGTCCTTAGGCCAAAAGTCTGAAAAGCCCTCCTTTTTGGTGAAGGTGCTGGTGGTTCAGAACTAAGGAAGAATAGCCTCGTCTGGTTACAGGGTGGGCAGTGGCTTCACCCCCGAGCAGAGTTCTGCCTGACTATGATGAAGGGCTGAGAAAACGCAAGAGTGAGCACTTTCCTAAGTCTCCGTTAACTTCTCCCAGCCTGCATCCATGTGTCTGATTAAGCTTGGTCTTCCTCTTGCAG
Seq C2 exon
CTGCAGTACAAGGCTGACCTGGCGTGGATGAAAGGGGTCAGGTGGCTGACTGAGGGCAGTCTCAACTTGGAACAGGCCAAGAAGGCTGGACAGCTGGTCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327:ENSBTAT00000025740:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(42.3=16.7),PF0088013=Nebulin=WD(100=39.4),PF0088013=Nebulin=PU(55.2=24.2)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAATACAAGAAAGGCTTTGAAAA
R:
TTGGCCTGTTCCAAGTTGAGAC
Band lengths:
278-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]