GgaINT0041835 @ galGal3
Intron Retention
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28939646-28940171:-
Coord C1 exon
chr6:28939974-28940171
Coord A exon
chr6:28939751-28939973
Coord C2 exon
chr6:28939646-28939750
Length
223 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGA
5' ss Score
5.46
3' ss Seq
ATATTCTTTTTCCTCAATAGCTT
3' ss Score
8.7
Exon sequences
Seq C1 exon
ATTGCCTACAAAAAAGATTTTGAGGAGAGTAAGACCCATTTCCATCTGCCTATGGACATGGTAAACCTGAGGCATGCTAAGAAGGCCCAAGCACTAGCTAGCGACTTGGATTATAGAAAGAGACTCCATGAATACACAGTGGTTCCGGAAGATTTGAAGACAAAATGGGCCAAGAAGGCCTATGGGCTCCAGAGTGAT
Seq A exon
GTAAGATGGTATAAGCTCAGCTTAATTATTGATGCAGTATGGACGTATATAAACTTTTTCAGAATTTGACACTGTCTCATTTCATGCGGACACAATCTGAGTTACAGTAGGACTTCTTAAATGGCTTTGAGATGTCTTTGAAACTGGCAAGTGTGCTCATGTTCACACCCAAACATTGTTCTTCTGCCCCTTTATGTCAGTAAATATTCTTTTTCCTCAATAG
Seq C2 exon
CTTCAATACAGGGAAGACCTGATGTGGATGAAAGGAGTTGGATGTATCACAGAAGGAAGTCTTAACATACAGCAAGCCAAAAAGGCAGGAGATTTGGTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914:ENSGALT00000014498:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(42.3=16.7),PF0088013=Nebulin=WD(100=39.4),PF0088013=Nebulin=PU(55.2=24.2)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGATTTTGAGGAGAGTAAGACCC
R:
CTCACTGACCAAATCTCCTGCC
Band lengths:
292-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]